RNA id: TU86685


Basic Information

Item Value
RNA id TU86685
length 520
lncRNA type intronic
GC content 0.57
exon number 1
gene id G78409
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 70347584 ~ 70348103 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACAAGCCAAGAAcgtagtcatttaggtaggttgGTAAACATGTTTCCCCCGAATCCAGCCTGGTAACAAGGAAAATGAGAATATAGGCCGACTAACTCTACATTTCAAATGGGGAATTAAGCAAAGGTCAAATAACATATTAAGGCATGTTAGCGTTTGTTATTTATTGAGGGTAGCTGTAAATAGTGCATACGCTAaatagaaaagaaagaaagaggggcaCCTACTTGAACTGTGGCGGAACCCGTTTTGTTCATATATTTACACTGTAACTTTTATATATTGTCAAGCCTTTGGCCCAAAGGCAGaatggaaaggagagaagagggtcaaatgacagagggagggaatgatgacaaagagagagagggagcatgacGAAAACAGCAGAAAAGAGAAACCCAAGGGAACAGGGAAAAATAAGTCAAAAATGAGGAACAGGAAATGTTAAAAGGAAAAGAGGATGTGTGCTTGCTGATTTCAAACAAAGATAGAAATTGAGAAAGAAACGACTCAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86663 lncRNA downstream 24016 70322921 ~ 70323568 (-) True G78389
TU86654 lncRNA downstream 40458 70306923 ~ 70307126 (-) True G78381
TU86653 lncRNA downstream 41150 70306201 ~ 70306434 (-) True G78380
TU86652 lncRNA downstream 41722 70305549 ~ 70305862 (-) True G78379
TU86649 lncRNA downstream 45896 70301428 ~ 70301688 (-) True G78376
TU86688 lncRNA upstream 5326 70353429 ~ 70353871 (-) True G78412
TU86691 lncRNA upstream 8171 70356274 ~ 70356487 (-) True G78415
TU86700 lncRNA upstream 10400 70358503 ~ 70358722 (-) True G78419
TU86845 lncRNA upstream 298021 70646124 ~ 70653964 (-) True G78558
TU87121 lncRNA upstream 384248 70732351 ~ 70743072 (-) True G78807
XM_036984207.1 mRNA downstream 236167 70095689 ~ 70111417 (-) True LOC110528401
XM_036984204.1 mRNA downstream 236168 70095689 ~ 70111416 (-) False LOC110528401
XM_036984194.1 mRNA downstream 258869 70082835 ~ 70088715 (-) False LOC118965321
XM_036984177.1 mRNA downstream 271686 70056552 ~ 70075898 (-) True LOC118965320
XM_036984184.1 mRNA downstream 281143 70056552 ~ 70066441 (-) False LOC118965320
XM_036984455.1 mRNA upstream 57237 70405340 ~ 70512265 (-) False camk2g2
XM_036984466.1 mRNA upstream 57237 70405340 ~ 70512265 (-) False camk2g2
XM_036984432.1 mRNA upstream 57237 70405340 ~ 70512266 (-) False camk2g2
XM_036984469.1 mRNA upstream 57237 70405340 ~ 70512266 (-) False camk2g2
XM_036984384.1 mRNA upstream 57237 70405340 ~ 70512267 (-) False camk2g2
TU86511 other downstream 258870 70085938 ~ 70088714 (-) True LOC118965321
TU86510 other downstream 259927 70085938 ~ 70087657 (-) False LOC118965321
TU86507 other downstream 262199 70082840 ~ 70085385 (-) False LOC118965321
TU86690 other upstream 6813 70354916 ~ 70355591 (-) True G78414
TU88004 other upstream 973847 71321950 ~ 71386523 (-) False G79616
TU88006 other upstream 980921 71329024 ~ 71386523 (-) False G79616
TU87998 other upstream 1028182 71376285 ~ 71386523 (-) False G79616
TU88001 other upstream 1028182 71376285 ~ 71386523 (-) False G79616

Expression Profile