RNA id: TU86690


Basic Information

Item Value
RNA id TU86690
length 676
RNA type TUCP
GC content 0.42
exon number 1
gene id G78414
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 70354916 ~ 70355591 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catttctttggggggcctccatgtgctcgccagaggtagcctgactgccattaggtaccgagatgagatcctcagaccccttgtgagaccatatgctggtgtggttgcccctgggttcctcctaatgcaagacaatgctagacctcatgtggctggagtgtgtcagcagttcctgcaagaagaatgcattgatgctatggaaggcccgcccgttccccagacctgaatccaattgagcacatctgggacatcatgtctcgttccatccaccaacgccacgttgcaccacagactgtccaggagttggcagatgctttagtccaggtctgggaggagatccctcaggacaccatccgccacctcatgcggagcatgcccaggcgttgtagggaggtcacacAGGCACAGCCACAcccactactgagcctcattttgacttgttttaaggacattcaagttggatcagcctttagtgtggttttccactttaattttgagtgtgactccaaatccagacctccatgggttgataaatttgatttccattgataatttttgtgtgattttgctttcagcacattcaactatgtaaagaaaaaattatttaataagaatatttcattcattcagatctaggatgtgttgttttagtgttccctttatttttttgagcagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86688 lncRNA downstream 1045 70353429 ~ 70353871 (-) True G78412
TU86685 lncRNA downstream 6813 70347584 ~ 70348103 (-) True G78409
TU86663 lncRNA downstream 31348 70322921 ~ 70323568 (-) True G78389
TU86654 lncRNA downstream 47790 70306923 ~ 70307126 (-) True G78381
TU86653 lncRNA downstream 48482 70306201 ~ 70306434 (-) True G78380
TU86691 lncRNA upstream 683 70356274 ~ 70356487 (-) True G78415
TU86700 lncRNA upstream 2912 70358503 ~ 70358722 (-) True G78419
TU86845 lncRNA upstream 290533 70646124 ~ 70653964 (-) True G78558
TU87121 lncRNA upstream 376760 70732351 ~ 70743072 (-) True G78807
TU87173 lncRNA upstream 467550 70823141 ~ 70877036 (-) True G78855
XM_036984207.1 mRNA downstream 243499 70095689 ~ 70111417 (-) True LOC110528401
XM_036984204.1 mRNA downstream 243500 70095689 ~ 70111416 (-) False LOC110528401
XM_036984194.1 mRNA downstream 266201 70082835 ~ 70088715 (-) False LOC118965321
XM_036984177.1 mRNA downstream 279018 70056552 ~ 70075898 (-) True LOC118965320
XM_036984184.1 mRNA downstream 288475 70056552 ~ 70066441 (-) False LOC118965320
XM_036984455.1 mRNA upstream 49749 70405340 ~ 70512265 (-) False camk2g2
XM_036984466.1 mRNA upstream 49749 70405340 ~ 70512265 (-) False camk2g2
XM_036984432.1 mRNA upstream 49749 70405340 ~ 70512266 (-) False camk2g2
XM_036984469.1 mRNA upstream 49749 70405340 ~ 70512266 (-) False camk2g2
XM_036984384.1 mRNA upstream 49749 70405340 ~ 70512267 (-) False camk2g2
TU86511 other downstream 266202 70085938 ~ 70088714 (-) True LOC118965321
TU86510 other downstream 267259 70085938 ~ 70087657 (-) False LOC118965321
TU86507 other downstream 269531 70082840 ~ 70085385 (-) False LOC118965321
TU86508 other downstream 269531 70082840 ~ 70085385 (-) False LOC118965321
TU86509 other downstream 269907 70082840 ~ 70085009 (-) False LOC118965321
TU88004 other upstream 966359 71321950 ~ 71386523 (-) False G79616
TU88006 other upstream 973433 71329024 ~ 71386523 (-) False G79616
TU87998 other upstream 1020694 71376285 ~ 71386523 (-) False G79616
TU88001 other upstream 1020694 71376285 ~ 71386523 (-) False G79616
TU88005 other upstream 1020694 71376285 ~ 71386523 (-) False G79616

Expression Profile