RNA id: TU86464


Basic Information

Item Value
RNA id TU86464
length 1320
lncRNA type antisense_over
GC content 0.50
exon number 6
gene id G78198
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 70715526 ~ 70726790 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGGGTACTCTGAGAAGCTCTCCACACACATGGGCTTTCCCGGGACCATGTCCACAATGGCGGCGTCTCCAGACTTCAGAGCCTTTGGGTTGTCCTCCAGCTTCTTGCCTGAGCGACGGTCAATCTTCTCCTTGAGCTCAGCAAACTTGCAGGCGATGTGGGCAGTGTGGCAGTCCAGCACTGGGGCATAGCCAGCACTGATCTGACCTGGGTGGTTCAGGATGATCACTGAGCAGTGAAGACTGCTGCCTCCATCGGGGGGTCGTTCTTGCTGTCTCCGGCCACATTGCCACGGCGAATGTCCTTGACGGACACATTCTTGACGTTGAAGCCCACGTTGTCACCGGGCATTGCTTCGGTCAGGGCCTCGTGGTGCATCTCAACAGACTTCACCTCAGTGGTCACATTAACAGGGGCAAAGGTCACCACCATGCCTGGCTTGATCATGCCCGTCTCCACACGACCCACAGGCACTGTGCCATAGGCGGAGGGGCTTGTCGGTGGGGCGGGACGGGGGCTGAATAGCATCCAGAGCTTCCAGCAGGGTGGTCCCGGACGAACTGCCATCCTTCCTGGTGATCTTCCATCCCTTAAACCAGGTCATTAGGACTGGCCTCCAGCATGTTGTCTCCGTTCCAGCCAGAGATGGGAACAAAGGCTACCGTATCCGGGTTGTAGCCAATCTTCTTGATGTAGGTGCTGACTTCCTTCACAATCTCCTCATAACGCTTCTGGCTGTAGTTGGGCTCAGTGGAGTCCATCTTGTTGATGCCCACGATCAGCTGCTTGACCCCCAGGGTGTAGGCCAGGAGGGCGTGCTCGCGGGTCTGCCCGTTCTTTGAGATGCCGGCCTCGAATTCACCCACACCGGCTGCCACAATCAGCACGGCACAGTCTGCCTGGGAGGTTCCAGTGATCATGTTCTTGATGAAGTCCCTGTGTCCGGGGGCGTCGATAATGGTGACGTAGTACTTGCTGGTCTCAAACTTCCACAGTGAGATGTCAATGGTGATGCCACGCTCCCTCTCTGCCTTCAGCTTGTCCAGCACCCAGGCATACTTAAAGGAGCCCTTCCCCATCTCAGCAGCCTCCTTCTCAAACTTTTCAATGGTCCTCTTGTCAATGCCACCGCACTTGTAGATCAGGTGGCCAGTGGTGGTGGACTTGCCAGAGTCCACGTGGCCGATCACCACAATGTTGATGTGGAGCTTCTCCTTGCCCATGGCTGACTGGTTAAAGTGACAGTGAGAGAGTCTGCAGGTGGAAAAGTGCAGCAAGGTCTATGGATCTGAAAGGATTTCCTGGGCAAAGACTCCACAA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86382 lncRNA upstream 34161 70571504 ~ 70681365 (+) True G78120
TU86362 lncRNA upstream 38245 70673030 ~ 70677281 (+) False kcnq5a
TU86366 lncRNA upstream 38245 70675249 ~ 70677281 (+) True kcnq5a
TU86348 lncRNA upstream 173910 70541121 ~ 70541616 (+) False G78098
TU86349 lncRNA upstream 173910 70541121 ~ 70541616 (+) False G78098
TU86946 lncRNA downstream 22382 70749172 ~ 70749562 (+) True G78649
TU86965 lncRNA downstream 45305 70772095 ~ 70774313 (+) True G78666
TU87040 lncRNA downstream 135894 70862684 ~ 70866754 (+) True G78728
TU87319 lncRNA downstream 274037 71000827 ~ 71001055 (+) True G78992
TU87323 lncRNA downstream 276411 71003201 ~ 71003514 (+) True G78996
XM_021610639.2 mRNA upstream 4048 70679883 ~ 70711478 (+) True ddx43
XM_036984475.1 mRNA upstream 38335 70555702 ~ 70677191 (+) False kcnq5a
XM_036984479.1 mRNA upstream 38335 70555702 ~ 70677191 (+) False kcnq5a
XM_036984480.1 mRNA upstream 38335 70555702 ~ 70677191 (+) False kcnq5a
XM_036984484.1 mRNA upstream 38335 70555702 ~ 70677191 (+) False kcnq5a
XM_021610738.2 mRNA downstream 309650 71036440 ~ 71076239 (+) False ccdc85a
XM_021610750.2 mRNA downstream 521312 71248102 ~ 71266030 (+) False vrk2
XM_036984515.1 mRNA downstream 521448 71248238 ~ 71266030 (+) True vrk2
XR_002474288.2 mRNA downstream 553671 71280461 ~ 71323276 (+) True LOC110528637
XM_021610797.2 mRNA downstream 1238000 71964790 ~ 71978789 (+) True asrgl1
TU86384 other upstream 60565 70571665 ~ 70654961 (+) True G78121
TU83729 other upstream 2340597 68374505 ~ 68374929 (+) True G75747
TU81938 other upstream 3930557 66784335 ~ 66784969 (+) True G74139
TU81852 other upstream 3956542 66756207 ~ 66758984 (+) True G74067
TU81346 other upstream 4291445 66420495 ~ 66424081 (+) True LOC118965274
TU87354 other downstream 309680 71036470 ~ 71076102 (+) True ccdc85a
TU90667 other downstream 2824826 73551616 ~ 73571737 (+) False G82111
TU90669 other downstream 2844276 73571066 ~ 73571737 (+) True G82111
TU92487 other downstream 4182435 74909225 ~ 74909806 (+) True G83836
TU92479 other downstream 4385870 75112660 ~ 75114190 (+) True G83829

Expression Profile