RNA id: TU87830



Basic Information


Item Value
RNA id TU87830
length 301
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G79463
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 71080261 ~ 71080561 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


acataatatgaaccaggtcttttaccaaatagggctatcttctgtataccaaccctaccttgtcacaacacaactgattgactcaaacgcattaagaagaaaataaattccaaaaattaactttcaacaaggcacacatgttaattgaaatgtattccaggtgactaactcatgaagctggttgagagaatgtcaagagtgtgcaaagctgtcatcaaggcaaagggtggctactttgaacaatctcaaatataaaatatattttgatttgtttaacacttttttggttactacatgattc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU87799 lncRNA downstream 47109 71032936 ~ 71033152 (-) True G79432
TU87790 lncRNA downstream 60459 71019579 ~ 71019802 (-) True G79423
TU87322 lncRNA downstream 77719 71002317 ~ 71002542 (-) True G78995
TU87233 lncRNA downstream 178049 70900815 ~ 70902212 (-) True G78910
TU87173 lncRNA downstream 203225 70823141 ~ 70877036 (-) True G78855
TU87863 lncRNA upstream 38079 71118640 ~ 71127069 (-) True G79493
TU87874 lncRNA upstream 54829 71135390 ~ 71156648 (-) True G79503
TU87884 lncRNA upstream 66507 71147068 ~ 71148132 (-) True G79513
TU87909 lncRNA upstream 105397 71185958 ~ 71186500 (-) True G79538
TU87941 lncRNA upstream 142531 71223092 ~ 71223323 (-) True G79565
XM_021610726.2 mRNA downstream 56388 71020483 ~ 71023873 (-) True soul2
XM_021610716.2 mRNA downstream 118282 70863113 ~ 70961979 (-) True slc24a3
XM_036984496.1 mRNA downstream 222493 70851922 ~ 70857768 (-) True si:dkey-187a12.4
XM_021610706.2 mRNA downstream 222518 70851922 ~ 70857743 (-) False si:dkey-187a12.4
XM_021610686.2 mRNA downstream 239555 70772035 ~ 70840706 (-) True rin2
LOC110532621 mRNA upstream 30289 71110850 ~ 71113278 (-) True LOC110532621
XM_021610759.2 mRNA upstream 184402 71264963 ~ 71280433 (-) False fancl
XM_021610766.2 mRNA upstream 184402 71264963 ~ 71280433 (-) False fancl
XM_036984523.1 mRNA upstream 184402 71264963 ~ 71282788 (-) False fancl
XM_036989840.1 mRNA upstream 595470 71676031 ~ 71683123 (-) True LOC110532628
TU86690 other downstream 724670 70354916 ~ 70355591 (-) True G78414
TU86511 other downstream 991547 70085938 ~ 70088714 (-) True LOC118965321
TU86510 other downstream 992604 70085938 ~ 70087657 (-) False LOC118965321
TU86508 other downstream 994876 70082840 ~ 70085385 (-) False LOC118965321
TU88004 other upstream 241389 71321950 ~ 71386523 (-) False G79616
TU88006 other upstream 248463 71329024 ~ 71386523 (-) False G79616
TU87998 other upstream 295724 71376285 ~ 71386523 (-) False G79616
TU88001 other upstream 295724 71376285 ~ 71386523 (-) False G79616
TU88005 other upstream 295724 71376285 ~ 71386523 (-) False G79616

Expression Profile