RNA id: TU88005


Basic Information

Item Value
RNA id TU88005
length 2163
RNA type TUCP
GC content 0.45
exon number 6
gene id G79616
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 71321950 ~ 71386523 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAAATTGATTCAAAAGATCAACCCTGGTTGCTGAGTGTGTAAGTGtgcataactgtgtgtgtgtgttagcttgcTTGCGTGCATGTGTCTTTCGTGAGATGCTCTGCCACTGTTTGCCCTGGCAAACACCGTCCAAATTGCTGAAGCAAggaagcgagaaagagagagaggggggaagagagggagtgggtatagatagagtaacagagagagagggagtgggtatagatagagtaatagagagagagggagtgggtatagatagagtaatagagagagagggagtgggtatagatagagtaacagagagagagggagtgggtatagatagagtaacagagagagagggagtgggtatagatagagtaacagagagagagggagtgggtatagatagagtaatagagatagagggagtgggtatagatagagtaacagagagagggagtgggtatagatagagtaacagagagagggagtgggtatagatagagtaacagagagagagggactgggtatagatagagtaacagagagagggagtgggtatagatagagtaacagaaggaggagtgggtatagatagagtaacagagagagagggactgggtattgatagagtaacagagagagagggagtgggtataaatagagtaacagagagagagggagtgggtatagatagagtaaaagagagagagggagtgggtatagatagagtaatagagagagagggggagtgggtatagatagagtaacagagagagggagtgggtatagatagagtaacagagagagggagtgggtatagatagagtaatagagagagggagtgggtatagatagagtaacagagagagagggagtgggtatagaaagagtaacagaaagagggagtgggtatagatagagtaatagagagagagggagtgggtatagatagagtaacagagagagggagtgggtatagatagagtaacagagagagggagtgggtatagatagagtaatagagagagggagtgggtatagatagagtaacaagagagagggagtgggtatagatagagtaacagagagagggagtgggtatagatagagtaaaagagagagagggagtgggtatagatagagtaacagagagagagggagtgggtatagatagagtaacagagagagagggagtgggtatagatagagtaacagagagagagggagtgggtatagatagagtaacagagagagagggactgggtatagatagagtaacagagagagagggagtgggtataaatagagtaacagagagagagggagtgggtatagatagagtaacagagagagagggagtgggtatagatagagtaacagagagagagggagtgggtatagatagagtaacagagagagagggagtgggtatagatagagtaacagagagagagggactgggtatagatagagtaacagagagagagggagtgggtataaatagagtaacagagagagagggagtgggtatagatagagtaacagagagagagggagtgggtagagataaagtaatagagagagagagggagtgggtatagatagagtaatagagagagagggagtgggtatagatagagtaatagagagagagagggagtgggtatagatagagtaatagagagagagagggagtgggtatagatagagtaacagagagagggagtgggtatagatagagtaacagagagagagagggagttggtatagatagagtaacagaaagaggagtgggtatagatagagtaacagagaaagagggagtgggtatagatagagtaacagagagagggagtgggtaatgatagagtaacagagagagagggagtgggtatagatagagtaacagagagagagagggagttggtatagatagagtaacagaaagaggagtgggtatagatagagtaacagaaaaaggagtgggtatagatagagtaacagagagagagactgaaaagatttggcatgggtcctcagatcctcaaaaagttctacagctgcaccatcgagagcatcctgattggttgcatcactgcctggtatggcaactgctcggcctccgactttAAGACACCaaagagtagaggtcgaccgactatgatttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87917 lncRNA downstream 109426 71263171 ~ 71266859 (-) True fancl
TU87952 lncRNA downstream 141510 71234461 ~ 71234775 (-) True G79576
TU87941 lncRNA downstream 152962 71223092 ~ 71223323 (-) True G79565
TU87909 lncRNA downstream 189785 71185958 ~ 71186500 (-) True G79538
TU87884 lncRNA downstream 228153 71147068 ~ 71148132 (-) True G79513
TU88083 lncRNA upstream 63131 71449654 ~ 71450022 (-) True G79688
TU88095 lncRNA upstream 82912 71469435 ~ 71470755 (-) False G79700
TU88178 lncRNA upstream 232959 71619482 ~ 71619944 (-) True G79780
TU88179 lncRNA upstream 235170 71621693 ~ 71622526 (-) True G79781
TU88270 lncRNA upstream 327202 71713725 ~ 71713933 (-) True G79871
XM_036984523.1 mRNA downstream 93497 71264963 ~ 71282788 (-) False fancl
XM_021610759.2 mRNA downstream 95852 71264963 ~ 71280433 (-) False fancl
XM_021610766.2 mRNA downstream 95852 71264963 ~ 71280433 (-) False fancl
LOC110532621 mRNA downstream 263007 71110850 ~ 71113278 (-) True LOC110532621
XM_021610726.2 mRNA downstream 352412 71020483 ~ 71023873 (-) True soul2
XM_036989840.1 mRNA upstream 289508 71676031 ~ 71683123 (-) True LOC110532628
XR_005053622.1 mRNA upstream 422416 71808939 ~ 71808991 (-) True LOC118966745
XM_036984529.1 mRNA upstream 437870 71824393 ~ 71872192 (-) True bcl11aa
XM_036984535.1 mRNA upstream 509701 71896224 ~ 71961729 (-) False LOC110528651
XM_036984542.1 mRNA upstream 509701 71896224 ~ 71961729 (-) False LOC110528651
TU86690 other downstream 1020694 70354916 ~ 70355591 (-) True G78414
TU86511 other downstream 1287571 70085938 ~ 70088714 (-) True LOC118965321
TU86510 other downstream 1288628 70085938 ~ 70087657 (-) False LOC118965321
TU86508 other downstream 1290900 70082840 ~ 70085385 (-) False LOC118965321
TU88097 other upstream 83159 71469682 ~ 71470459 (-) True G79700
TU88304 other upstream 356522 71743045 ~ 71743809 (-) True G79904
TU89450 other upstream 821406 72207929 ~ 72211089 (-) True G80957
TU89447 other upstream 862081 72248604 ~ 72251918 (-) True LOC110528794
TU92060 other upstream 3185924 74572447 ~ 74572789 (-) True G83429

Expression Profile