RNA id: TU89420


Basic Information

Item Value
RNA id TU89420
length 1635
lncRNA type antisense_over
GC content 0.46
exon number 3
gene id G80934
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 72150787 ~ 72152893 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTCACataatatgttgatgttggggtggtgctggagattaaTATGAAGTAGAAGAATGTTGGATATGTCCCATTAAAATGATACAACTTGGATTAGTAAGCACAAAGTTACTTAAATGGAGAGATGTATCCCAACTCCCCACATTAAGTTAGTTTCAAAATGAAAGAAAAGGGTGTCAGAATCAATAAGACCACCAAATCACCAGGGATTTTCTATTCGTTTGACAGAGGTTCGGTTTTTCTATTAAAATACCTCTGATCGAGAAAATATTTTGCCGACCATGTGTAACGTGAAATGATAATAAATCATAAATCATTCAGTAATAGTTTCAGTGCCAGAGCAAATTCTCCACAACCTCAACCACTTGAGTTTCCATTTTAAACACTCCTCACCCATAAATGTTGTTCTTGTCCACTTATGGCTACAGCACATCTCACATGTCCTGACAATTTCCTCACAAAATCTTTCAAAGACAGAACCCAAGTATTTTTTACATAGATTATGAAAGTGCCATAGAAACCACAGAAGTCAAAAACAACTCAGGGGAAGAGGGGCAGAGGGATATCAGGCAGTGATGTCAGAGCTCAGGCCTGAAACCATCTCCTCTGGAattcctgtctgcctgcctgtgctctagtctccactcctctcctggaGTTGTTTTGCCAAGCTGGGCTGAAGAGAGGGAGTGTTGAGTGTAAACTGAGATAGCAAATCAACTCTGTGACATCAACTCCTTCAATCCTGATCTTTGGGAGCCACCAGGTgcgcaggcttttgctccagacAGGTACTAAAATAACTGAATCAAGTGTTATAGTAGTGGGCTGGGGGGGAAATCTCCCCACTCTGTGAGTCCCAGGGACCAGGATTGAAGAACGCTAAATAGACAGAGATAGAACAAGTGAACTGTGGAAGGAGAGATCAGAGGGTATTTCAGTCCTGTGAGACAGTGATTTGTTTGTCAGTGCAGAAAGGCAGTGAGAGACAGGGTTGAGGAGTCTTACTTTTTTGATAGGGGCCGGCTCTGAGGGCCAGGGCATCTGTGGCTTTCAGAGGTAAACAGAGATACAGTGTGTTTATACTCTCCAGCCCATAGGGGGCGCTCAGGTTATCACTTTTGATTGGGTATGCGTCACTATGTAAATATTTACATTTCTCTGACCAAGTCTTGAAATGTCAAAGTAAGTGTTctgcatccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacacactcaCCGGCAGGTTCTCTTTCTGCTGCAGAGCGGCCTTCTTCTTCCAGAGGCGGTCTCGGAGCTCACTGACGCGTTTGTCCATAGAGGCCACCTCCAGGTTGCGCTTGTTCAGACTGTCTCTCTGATGCTGCAGCTTGGCGTTCTGCTCCTGGTTCAGCTTGTTACGCAGCTGCAGCTCCTTGTAGAGGTGGTCCAGCTCAGCCACAGAGCTCTGGTTGTCTTTGAAGCCGTCCATCTTGCCATTCTTGAGCATCTCCAGCTGTCTGTTGAGCTCTTCAACCTTGGACACAGCCACCACCAGCTCTCTCTGCTTCTGTTGGAACAGACCATTCATCTGCTCTatctcctccaCCAGCTTGCCGTTGCTGAGGCGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89401 lncRNA downstream 25897 72124677 ~ 72124890 (-) True G80915
TU88634 lncRNA downstream 189469 71927506 ~ 71961318 (-) True G80190
TU88567 lncRNA downstream 309218 71841320 ~ 71841569 (-) True G80148
TU88565 lncRNA downstream 313014 71837529 ~ 71837773 (-) True G80146
TU88564 lncRNA downstream 314463 71836098 ~ 71836324 (-) True G80145
TU89457 lncRNA upstream 49943 72202836 ~ 72204454 (-) False LOC110528794
TU89468 lncRNA upstream 51614 72204507 ~ 72264780 (-) True G80975
TU89591 lncRNA upstream 275102 72427995 ~ 72428306 (-) True G81095
TU89615 lncRNA upstream 300515 72453408 ~ 72458642 (-) True G81119
TU89627 lncRNA upstream 315951 72468844 ~ 72516167 (-) True G81127
XM_036984638.1 mRNA downstream 46760 72041913 ~ 72104027 (-) True smap1
XM_036984626.1 mRNA downstream 46763 72041913 ~ 72104024 (-) False smap1
XM_036984629.1 mRNA downstream 46763 72041913 ~ 72104024 (-) False smap1
XM_036984649.1 mRNA downstream 46765 72041913 ~ 72104022 (-) False smap1
XM_036984645.1 mRNA downstream 46766 72041913 ~ 72104021 (-) False smap1
XM_021610957.2 mRNA upstream 23522 72176415 ~ 72193773 (-) False LOC110528822
XM_021610964.2 mRNA upstream 23522 72176415 ~ 72193773 (-) False LOC110528822
XM_021610973.2 mRNA upstream 23522 72176415 ~ 72193773 (-) True LOC110528822
XM_036984777.1 mRNA upstream 49921 72202814 ~ 72251916 (-) False LOC110528794
XM_036984785.1 mRNA upstream 49921 72202814 ~ 72251916 (-) False LOC110528794
TU88304 other downstream 406978 71743045 ~ 71743809 (-) True G79904
TU88097 other downstream 680328 71469682 ~ 71470459 (-) True G79700
TU88001 other downstream 764264 71376285 ~ 71386523 (-) False G79616
TU89450 other upstream 55036 72207929 ~ 72211089 (-) True G80957
TU89447 other upstream 95711 72248604 ~ 72251918 (-) True LOC110528794
TU92060 other upstream 2419554 74572447 ~ 74572789 (-) True G83429
TU92810 other upstream 2819319 74972212 ~ 74973321 (-) True fank1
TU93438 other upstream 3375450 75528343 ~ 75528903 (-) True G84713

Expression Profile