RNA id: TU89468


Basic Information

Item Value
RNA id TU89468
length 219
lncRNA type read_through
GC content 0.29
exon number 2
gene id G80975
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 72204507 ~ 72264780 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttaaagtTAACCTTAAACTAAATAAAACTAGTAAATCAGATCTgaaaactaactgaaactaaactgaatttcaaataaaaatattaaaacaaatagaaataaaaaaatatctatcaaaacacaaaactataataaccttggtggAGACACCTGTGACTAGCAAGGCTGATCAAATCAGAGACCAGTGTCTGGGTTAACAATAATTACTGTAGTTCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89457 lncRNA downstream 53 72202836 ~ 72204454 (-) False LOC110528794
TU89420 lncRNA downstream 51614 72150787 ~ 72152893 (-) True G80934
TU89401 lncRNA downstream 79617 72124677 ~ 72124890 (-) True G80915
TU88634 lncRNA downstream 243189 71927506 ~ 71961318 (-) True G80190
TU88567 lncRNA downstream 362938 71841320 ~ 71841569 (-) True G80148
TU89591 lncRNA upstream 163215 72427995 ~ 72428306 (-) True G81095
TU89615 lncRNA upstream 188628 72453408 ~ 72458642 (-) True G81119
TU89627 lncRNA upstream 204064 72468844 ~ 72516167 (-) True G81127
TU89619 lncRNA upstream 219014 72483794 ~ 72508066 (-) True G81120
TU89649 lncRNA upstream 227947 72492727 ~ 72532701 (-) True G81145
XM_021610957.2 mRNA downstream 10734 72176415 ~ 72193773 (-) False LOC110528822
XM_021610964.2 mRNA downstream 10734 72176415 ~ 72193773 (-) False LOC110528822
XM_021610973.2 mRNA downstream 10734 72176415 ~ 72193773 (-) True LOC110528822
XM_036984638.1 mRNA downstream 100480 72041913 ~ 72104027 (-) True smap1
XM_036984629.1 mRNA downstream 100483 72041913 ~ 72104024 (-) False smap1
XM_036984831.1 mRNA upstream 11918 72276698 ~ 72281244 (-) True LOC118965494
XM_021611017.2 mRNA upstream 65555 72330335 ~ 72355781 (-) True LOC110528856
XM_036984882.1 mRNA upstream 244178 72508958 ~ 72525718 (-) False LOC110532653
XM_036984883.1 mRNA upstream 244178 72508958 ~ 72525721 (-) True LOC110532653
XM_021616746.2 mRNA upstream 341955 72606735 ~ 72607622 (-) True LOC110532660
TU88304 other downstream 460698 71743045 ~ 71743809 (-) True G79904
TU88097 other downstream 734048 71469682 ~ 71470459 (-) True G79700
TU88001 other downstream 817984 71376285 ~ 71386523 (-) False G79616
TU92060 other upstream 2307667 74572447 ~ 74572789 (-) True G83429
TU92810 other upstream 2707432 74972212 ~ 74973321 (-) True fank1
TU93438 other upstream 3263563 75528343 ~ 75528903 (-) True G84713
TU94659 other upstream 4068688 76333468 ~ 76334136 (-) True G85866
TU94594 other upstream 4102513 76367293 ~ 76399956 (-) True ccser2a

Expression Profile