RNA id: TU88788


Basic Information

Item Value
RNA id TU88788
length 1581
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G80324
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 72246730 ~ 72248352 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGAGTTTCTTTATTAACAAGGTTTACCAGCAAGTTAGCACACAGAATTATTGATGGAACAGTACACAACAGCtgtgatttgttacattaaacCATAAGAAATAACCATCAGGAAAAGGGTTATATACACTGCCAATAGCCAGCACTACATTGGTCAAGAGTTTCATTTCAAAACACATGCACATTTGAGTGGAATAATTATGTAAAACCATGAATCATACATCATGTGCAGATaaaatacagtacacacataaaGTATATATATCGTTATTGCTAATGTGTGGTGTTTAGACAGATTTTTCATGTAGAAAATACAATGTGTTGTTGGGAATAGAATCTGATACCCACATTTACAGCATGGCATACTGCACTTAGATCTAAGAATGAAGATGTATAGCTCTTACTCCCAGAGGGAATTAAATATTGAAAGTATACAAAAATGTAGAATGAAGGTTACGATAAGGAAAAATACAGGTAAAGCCTATTGACCGTTGTAGACACTGATTGCACAAAACACCTTTCCCTTTGcccacagaacagcctcaatttgtcagggcatggactcaacaaggtgtcgaaagtgttccacaatGATACTGGCCGATGCTGACTTCTATGCTTCCCACATTTTTGTagagttggctggatgtcctttgggtggtggacgattcttgatacacacaggaaactattgaATGTGAAAACTCAGCAGCATTTTAAAGTTCTTGACACAATCCGGTGCACCtgatacctactaccataccccgttcaaaggcacttaaatcttttatcttgcccattcaccctcttaaaacctcttaaggatccaccTCTTTTTttcaatatcagatatgtctatgtcctgggaaatgttcttgttacttgcaacctcatgctaatcacattagcctacgttagctcaaccttcCCACAGGGAAACCAACCGATCCTGTAGAGGGTAATggtacacaattcatgtctcgattttctcaatgcttaaaaatccttctttaacctgtcttctcctcttcatctacacttatTTAATTGGATTTAAATAGTGACATCAATTAGGGATCGTaacattcacctggattcacctggccaaAAGTATGACCTCCAGAAGTTTTGAGACAGTTAcacatgttttgttattttggcTCTGTACTTCAACACTTTGAATTTTGACAGTCTGCAATTTAATTTTGGTGTATTTCCTTTCATATcgggtgaactgtttagaaattacaacAACCGATTGTTCCCAGTCCCCCCTTTTAGGGGACTAAAAGTTTTGGGACAAATTCACGCATATATATTAAAATAGtccaaagtttagtatttggtcccatattcccagcatgcaatgactacatcaagcttgtatctctacaaacttgttggatgtatttgcagtttgttttggttgtgtttcagattattttgtgcctaatagaaatgaatggtaagcAATGTAATGTGTCATCACTTTTGtcgtcacttttattgtaaataagaatagaatacatTTCTAAACACTACTTCATTAATGTGgacgctaccatgattacggaaaGTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88794 lncRNA upstream 17577 72227445 ~ 72229153 (+) True LOC118965495
TU88759 lncRNA upstream 121181 72125349 ~ 72125549 (+) True G80298
TU88757 lncRNA upstream 122840 72123659 ~ 72123890 (+) True G80296
TU88443 lncRNA upstream 273300 71881325 ~ 71973430 (+) True G80033
TU88790 lncRNA downstream 2289 72250641 ~ 72267527 (+) True G80326
TU88881 lncRNA downstream 78052 72326404 ~ 72332579 (+) False G80413
TU88882 lncRNA downstream 78052 72326404 ~ 72332579 (+) False G80413
TU88883 lncRNA downstream 78052 72326404 ~ 72332579 (+) False G80413
TU88884 lncRNA downstream 78052 72326404 ~ 72332579 (+) False G80413
LOC110532645 mRNA upstream 7105 72222317 ~ 72239625 (+) True LOC110532645
XR_005052784.1 mRNA upstream 17579 72228550 ~ 72229151 (+) False LOC118965495
XM_036984729.1 mRNA upstream 79317 72116682 ~ 72167413 (+) False tp53bp2a
XM_021611000.2 mRNA downstream 63790 72312142 ~ 72324340 (+) False polh
XM_021611008.2 mRNA downstream 63912 72312264 ~ 72324340 (+) True polh
XM_021611028.2 mRNA downstream 121861 72370213 ~ 72371779 (+) True LOC110528865
XM_021611043.2 mRNA downstream 171597 72419949 ~ 72508133 (+) True pcsk2
XM_021600162.2 mRNA downstream 297261 72545613 ~ 72561059 (+) True prokr1b
TU87354 other upstream 1170628 71036470 ~ 71076102 (+) True ccdc85a
TU86384 other upstream 1591769 70571665 ~ 70654961 (+) True G78121
TU83729 other upstream 3871801 68374505 ~ 68374929 (+) True G75747
TU81938 other upstream 5461761 66784335 ~ 66784969 (+) True G74139
TU81852 other upstream 5487746 66756207 ~ 66758984 (+) True G74067
TU90667 other downstream 1303264 73551616 ~ 73571737 (+) False G82111
TU90669 other downstream 1322714 73571066 ~ 73571737 (+) True G82111
TU92487 other downstream 2660873 74909225 ~ 74909806 (+) True G83836
TU92479 other downstream 2864308 75112660 ~ 75114190 (+) True G83829
TU92648 other downstream 2896512 75144864 ~ 75145512 (+) True G83979

Expression Profile