RNA id: TU89619


Basic Information

Item Value
RNA id TU89619
length 1465
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id G81120
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 72483794 ~ 72508066 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTATTATGGTATTCTTTTTTAGGTGCACAGGCGTCAAAATTAATCACACGTTCCTTGTCTTGTTTATATAGAAACAGTTGCTTGtcacaaaaatataaacagaaaGAAGTATCACTGCTCTGATTGCAAGATATTCAACTTTAAGAATGACACAGAAAATCGTTTACAGTCACAAACTGTACAATAGTTGTTTTACCAGAGGTGGAGGGGCGGGGAAATGCAATAACACCATATAGTGGATATATTCTGTTTATATACATTTTAGTAAAGTGTAAAAAACATAGACAGAAAGCAAGATGGGATCTTTTAGTTTTCTCTATAGAACAGATTATTTGAAGGTTACACTTTTATCATAATCGGATTACAAGAAACATCTATCGAAAGTGGAGGGCTAATataaacacagaaaaacaaaaagcagagaaaagggagggaggggagagaaggagagaaagtcaatgagagaggagagaaaggagggaggagagaaagtgtgagagagggcaagagagggagagaaagttatttggtgagagaaagggaaagtgagagaatgggaaagtgagagaaaaataggagagaagagagagggggagtgagagaaagataggagagatgagagagggggagtgagagaaagaaatagagagagagagagtggcccgGCATGCTGACCTGACCAGACGGTGTTTAGTTAGCTACGTCAGCTAGTTTTTACTCAGCAGGCTCTTCAGGCTCCTCTCCACCGCCTCGTCCAGCTCTTCCTCCAACTCCTCCTTTTTGGACATGGCTAATTTAGACTGGTAGTCACGCACTATCTGGTCTATGTAAGGAGCACTTTGTGTTCCATGCAGCATGAGGGTCCACTCCTTCAGGACACCCCTCTGTGGCTCGTTTCCCTGGAAGCCCACCTCCAGGACCCAGGTCCCGCGGGGGTCCTCTCCCCAGGTTTGGGTAGTCATGAAGGGCCACTTGTCGAAGCCCACCTTGGCATCGTCGTCCCGGGGCCGGCGGCTTAGTAGGATGGACTTGGTGCCCATGGGGGAGGTCATGTTGATGTTGAGGTCACCACGGCGACTGCCATTGACGGTGATCACGGCCTGAACATGCTCCAGGTAGCGGACAAAGTTGTCCTTCCCCTGGCAGGAGTCAGTGGAGATGGCCAGGATCAGCTTGTCACCCGACTGGATCtGGACATCCTGCAATGATCCAGCCACGCAGTGAAAACGCTCAGGGACGGTCTTCCACTCCTTGGCCATCTTGACCATGCCGCCAGCATCCAGCACACCGTAACCAAACAGGTGGTTGAACTCCAGGCCCACGCCGTTCCTCCGCCACTGGTGCACctcatcatgaagctggttccTCTTGGAGGTCAGCACAGACAGGTGCTGCATGTCCCTCCATGTCAGGTTGGGGCTgtggggtgaggaggggagagggagggagggagggagaggagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89615 lncRNA downstream 25152 72453408 ~ 72458642 (-) True G81119
TU89591 lncRNA downstream 55488 72427995 ~ 72428306 (-) True G81095
TU89468 lncRNA downstream 219014 72204507 ~ 72264780 (-) True G80975
TU89457 lncRNA downstream 279340 72202836 ~ 72204454 (-) False LOC110528794
TU89420 lncRNA downstream 330901 72150787 ~ 72152893 (-) True G80934
TU89784 lncRNA upstream 208463 72716529 ~ 72759729 (-) True G81275
TU89787 lncRNA upstream 209420 72717486 ~ 72718244 (-) True G81277
TU90041 lncRNA upstream 583467 73091533 ~ 73091739 (-) True G81524
TU90047 lncRNA upstream 586376 73094442 ~ 73094714 (-) True G81530
TU90084 lncRNA upstream 610783 73118849 ~ 73119103 (-) True G81565
XM_021611017.2 mRNA downstream 128013 72330335 ~ 72355781 (-) True LOC110528856
XM_036984831.1 mRNA downstream 202550 72276698 ~ 72281244 (-) True LOC118965494
XM_036984763.1 mRNA downstream 214260 72260084 ~ 72269534 (-) False LOC110528758
XM_036984882.1 mRNA upstream 892 72508958 ~ 72525718 (-) False LOC110532653
XM_036984883.1 mRNA upstream 892 72508958 ~ 72525721 (-) True LOC110532653
XM_021616746.2 mRNA upstream 98669 72606735 ~ 72607622 (-) True LOC110532660
XM_021611063.2 mRNA upstream 104120 72612186 ~ 72617587 (-) False plek
XM_021611054.2 mRNA upstream 104120 72612186 ~ 72618218 (-) True plek
TU89447 other downstream 231876 72248604 ~ 72251918 (-) True LOC110528794
TU89450 other downstream 272705 72207929 ~ 72211089 (-) True G80957
TU88304 other downstream 739985 71743045 ~ 71743809 (-) True G79904
TU88097 other downstream 1013335 71469682 ~ 71470459 (-) True G79700
TU88009 other downstream 1097271 71376285 ~ 71386523 (-) True G79616
TU92060 other upstream 2064381 74572447 ~ 74572789 (-) True G83429
TU92810 other upstream 2464146 74972212 ~ 74973321 (-) True fank1
TU93438 other upstream 3020277 75528343 ~ 75528903 (-) True G84713
TU94659 other upstream 3825402 76333468 ~ 76334136 (-) True G85866
TU94594 other upstream 3859227 76367293 ~ 76399956 (-) True ccser2a

Expression Profile