RNA id: TU90047



Basic Information


Item Value
RNA id TU90047
length 273
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G81530
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 73094442 ~ 73094714 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gttttatctttgtaattatggggtattgtgtgtagattgcggaGTATTGTTTttgacagtgcttgagaggatcttaaatcaaatcaaatgttatttgtcacatgtgccgaatacaacaggtgtagtagaccttacagtgaaatgcttacttacaagcccttaaccaataatacAGTTAAGGAAATACCTAAGAAAAAGTAAGAGACAAGaacaacaaataattaaagagcagcagtaaataacaacatcAAGGTAATTGagggaatatgtaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU90041 lncRNA downstream 2703 73091533 ~ 73091739 (-) True G81524
TU89784 lncRNA downstream 334713 72716529 ~ 72759729 (-) True G81275
TU89787 lncRNA downstream 376198 72717486 ~ 72718244 (-) True G81277
TU89649 lncRNA downstream 561741 72492727 ~ 72532701 (-) True G81145
TU89627 lncRNA downstream 578275 72468844 ~ 72516167 (-) True G81127
TU90084 lncRNA upstream 24135 73118849 ~ 73119103 (-) True G81565
TU90086 lncRNA upstream 25174 73119888 ~ 73120089 (-) True G81567
TU90117 lncRNA upstream 39934 73134648 ~ 73135125 (-) True LOC110528940
TU90358 lncRNA upstream 45833 73140547 ~ 73141554 (-) False LOC110528926
TU90359 lncRNA upstream 45918 73140632 ~ 73141615 (-) True LOC110528926
XM_021611054.2 mRNA downstream 476224 72612186 ~ 72618218 (-) True plek
XM_021611063.2 mRNA downstream 476855 72612186 ~ 72617587 (-) False plek
XM_021616746.2 mRNA downstream 486820 72606735 ~ 72607622 (-) True LOC110532660
XM_036984883.1 mRNA downstream 568721 72508958 ~ 72525721 (-) True LOC110532653
XM_036984882.1 mRNA downstream 568724 72508958 ~ 72525718 (-) False LOC110532653
XM_021611112.2 mRNA upstream 39939 73134653 ~ 73136850 (-) False LOC110528940
XM_021611105.2 mRNA upstream 45750 73140464 ~ 73269580 (-) False LOC110528926
XM_036984929.1 mRNA upstream 45750 73140464 ~ 73269975 (-) False LOC110528926
XM_036984926.1 mRNA upstream 47234 73141948 ~ 73290110 (-) False LOC110528926
XM_021611124.2 mRNA upstream 228738 73323452 ~ 73343583 (-) False LOC110528949
TU89447 other downstream 842524 72248604 ~ 72251918 (-) True LOC110528794
TU89450 other downstream 883353 72207929 ~ 72211089 (-) True G80957
TU88304 other downstream 1350633 71743045 ~ 71743809 (-) True G79904
TU88097 other downstream 1623983 71469682 ~ 71470459 (-) True G79700
TU88009 other downstream 1707919 71376285 ~ 71386523 (-) True G79616
TU92060 other upstream 1477733 74572447 ~ 74572789 (-) True G83429
TU92810 other upstream 1877498 74972212 ~ 74973321 (-) True fank1
TU93438 other upstream 2433629 75528343 ~ 75528903 (-) True G84713
TU94659 other upstream 3238754 76333468 ~ 76334136 (-) True G85866
TU94594 other upstream 3272579 76367293 ~ 76399956 (-) True ccser2a

Expression Profile