RNA id: TU90575



Basic Information


Item Value
RNA id TU90575
length 248
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G82033
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 73456003 ~ 73456250 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaAATTATGAGAATATATTGaaccaacatctcaagacatcagtcaggaagttaaagcttggtcgcaaatgtgtcttccaaatggacaatgaccccaagcatacttccaagttgtggcaaaatgagcaaggaggcctataaacctgactcagttacaccagctccgtcaggaggaatgggccaaaattcacccagcttattgtgggaagcttgtggaaggctacctgaaacgtttgacccaagttaaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU90572 lncRNA downstream 4062 73451726 ~ 73451941 (-) True G82030
TU90560 lncRNA downstream 5568 73448832 ~ 73450435 (-) True G82021
TU90554 lncRNA downstream 26991 73428806 ~ 73429012 (-) True G82018
TU90532 lncRNA downstream 55483 73400146 ~ 73400520 (-) True G81996
TU90529 lncRNA downstream 74181 73381607 ~ 73381822 (-) True G81993
TU90577 lncRNA upstream 1518 73457768 ~ 73458081 (-) True G82035
TU90581 lncRNA upstream 3541 73459791 ~ 73486886 (-) True G82038
TU90582 lncRNA upstream 26357 73482607 ~ 73489103 (-) True G82039
TU90664 lncRNA upstream 91073 73547323 ~ 73547671 (-) True LOC110529015
TU90732 lncRNA upstream 95548 73551798 ~ 73610100 (-) False G82165
XM_021611119.2 mRNA downstream 82266 73323452 ~ 73373737 (-) True LOC110528949
XM_021611124.2 mRNA downstream 112420 73323452 ~ 73343583 (-) False LOC110528949
XM_036984926.1 mRNA downstream 165893 73141948 ~ 73290110 (-) False LOC110528926
XM_036984929.1 mRNA downstream 186028 73140464 ~ 73269975 (-) False LOC110528926
XM_021611105.2 mRNA downstream 186423 73140464 ~ 73269580 (-) False LOC110528926
XM_021611166.2 mRNA upstream 90848 73547098 ~ 73548953 (-) False LOC110529015
XM_021611213.2 mRNA upstream 181385 73637635 ~ 73639525 (-) True sfr1
XM_021611234.2 mRNA upstream 219408 73675658 ~ 73711293 (-) False slka
XM_021611222.2 mRNA upstream 219408 73675658 ~ 73711294 (-) False slka
XM_021611226.2 mRNA upstream 219408 73675658 ~ 73711294 (-) False slka
TU89447 other downstream 1204085 72248604 ~ 72251918 (-) True LOC110528794
TU89450 other downstream 1244914 72207929 ~ 72211089 (-) True G80957
TU88304 other downstream 1712194 71743045 ~ 71743809 (-) True G79904
TU88097 other downstream 1985544 71469682 ~ 71470459 (-) True G79700
TU88009 other downstream 2069480 71376285 ~ 71386523 (-) True G79616
TU92060 other upstream 1116197 74572447 ~ 74572789 (-) True G83429
TU92810 other upstream 1515962 74972212 ~ 74973321 (-) True fank1
TU93438 other upstream 2072093 75528343 ~ 75528903 (-) True G84713
TU94659 other upstream 2877218 76333468 ~ 76334136 (-) True G85866
TU94594 other upstream 2911043 76367293 ~ 76399956 (-) True ccser2a

Expression Profile