RNA id: TU90581


Basic Information

Item Value
RNA id TU90581
length 519
lncRNA type antisense_over
GC content 0.33
exon number 2
gene id G82038
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 73459791 ~ 73486886 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTCAattctttttaatattttctgtATTTTGTGCTGGGATTTTACAATCTTACATACATTAGCACTCTTGGCTTGGTGATAAATAAATAGTCTCAAATTCATCAGATGTATCTTCCAATTTGATTTGTAAACTAATAATACCAAATGGTATACAAAATGGAAGTACAGGTCAAACCAATGAGAGCGTACTTAAACATTTGATATAAAAATAATGTGTACAATGTTGTATATATCAGTCAACCTACAAACCATTCATATAATTGTTCCACAATAATACGAACCATATCTAGTCTCAAAACAAATGTGGATACAAATAGTTTTGTAATCTAATCACGAGCTATACtttttgaagtcggaagtttacatacacttggattggagtcattaaaacttgtttttcaaccactccccaacttcttgttaacaaactatagtactttggtgtgaaaagtgcaaatcaatcccagaacaacagcaaaggaccttgtgaaaatgctggaggaaataggtacaaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90577 lncRNA downstream 1710 73457768 ~ 73458081 (-) True G82035
TU90575 lncRNA downstream 3541 73456003 ~ 73456250 (-) True G82033
TU90572 lncRNA downstream 7850 73451726 ~ 73451941 (-) True G82030
TU90560 lncRNA downstream 9356 73448832 ~ 73450435 (-) True G82021
TU90554 lncRNA downstream 30779 73428806 ~ 73429012 (-) True G82018
TU90664 lncRNA upstream 60437 73547323 ~ 73547671 (-) True LOC110529015
TU90732 lncRNA upstream 64912 73551798 ~ 73610100 (-) False G82165
TU90743 lncRNA upstream 77942 73564828 ~ 73606712 (-) True G82176
TU90731 lncRNA upstream 84101 73570987 ~ 73610100 (-) True G82165
TU90784 lncRNA upstream 134452 73621338 ~ 73621803 (-) True G82213
XM_021611119.2 mRNA downstream 86054 73323452 ~ 73373737 (-) True LOC110528949
XM_021611124.2 mRNA downstream 116208 73323452 ~ 73343583 (-) False LOC110528949
XM_036984926.1 mRNA downstream 169681 73141948 ~ 73290110 (-) False LOC110528926
XM_036984929.1 mRNA downstream 189816 73140464 ~ 73269975 (-) False LOC110528926
XM_021611105.2 mRNA downstream 190211 73140464 ~ 73269580 (-) False LOC110528926
XM_021611166.2 mRNA upstream 60212 73547098 ~ 73548953 (-) False LOC110529015
XM_021611213.2 mRNA upstream 150749 73637635 ~ 73639525 (-) True sfr1
XM_021611234.2 mRNA upstream 188772 73675658 ~ 73711293 (-) False slka
XM_021611222.2 mRNA upstream 188772 73675658 ~ 73711294 (-) False slka
XM_021611226.2 mRNA upstream 188772 73675658 ~ 73711294 (-) False slka
TU89447 other downstream 1207873 72248604 ~ 72251918 (-) True LOC110528794
TU89450 other downstream 1248702 72207929 ~ 72211089 (-) True G80957
TU88304 other downstream 1715982 71743045 ~ 71743809 (-) True G79904
TU88097 other downstream 1989332 71469682 ~ 71470459 (-) True G79700
TU88009 other downstream 2073268 71376285 ~ 71386523 (-) True G79616
TU92060 other upstream 1085561 74572447 ~ 74572789 (-) True G83429
TU92810 other upstream 1485326 74972212 ~ 74973321 (-) True fank1
TU93438 other upstream 2041457 75528343 ~ 75528903 (-) True G84713
TU94659 other upstream 2846582 76333468 ~ 76334136 (-) True G85866
TU94594 other upstream 2880407 76367293 ~ 76399956 (-) True ccser2a

Expression Profile