RNA id: TU90784


Basic Information

Item Value
RNA id TU90784
length 339
lncRNA type intronic
GC content 0.36
exon number 2
gene id G82213
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 73621338 ~ 73621803 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCCCTAGTGTCCTACGTGCCAAAGAAAGGCAAAAATGTGGTACTCATGAGTGTTCTGAATAGGGATGACcagaaaaaaacagaaatcataATGAATTATTACAATGCCATGAAAGGAGCGGTGGACAATTTTTAGATAAGCTGGTGACTGGCTACAGCTGCAAAAGAAGAACCCTACGCTGGCCACTTGGACATTTTGGCGTACAACGTGTTTGTCATCTTGACGAATCCATCGTGAAgaggattcaggaggaggatgcGGCTGCCCCATCCGCATGACCCACAGAACCGACAATTCACACAAATTGCAGCCGGTACCAACAAGAAGAAGCGCTGcga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90732 lncRNA downstream 11238 73551798 ~ 73610100 (-) False G82165
TU90731 lncRNA downstream 11238 73570987 ~ 73610100 (-) True G82165
TU90743 lncRNA downstream 14626 73564828 ~ 73606712 (-) True G82176
TU90664 lncRNA downstream 73667 73547323 ~ 73547671 (-) True LOC110529015
TU90582 lncRNA downstream 132235 73482607 ~ 73489103 (-) True G82039
TU90788 lncRNA upstream 4555 73626358 ~ 73626719 (-) True G82217
TU90807 lncRNA upstream 23713 73645516 ~ 73645939 (-) True G82234
TU91202 lncRNA upstream 50281 73672084 ~ 73674931 (-) True G82605
TU91208 lncRNA upstream 53284 73675087 ~ 73675418 (-) False G82608
TU91209 lncRNA upstream 53284 73675087 ~ 73675369 (-) True G82608
XM_021611166.2 mRNA downstream 72385 73547098 ~ 73548953 (-) False LOC110529015
XM_021611119.2 mRNA downstream 247601 73323452 ~ 73373737 (-) True LOC110528949
XM_021611124.2 mRNA downstream 277755 73323452 ~ 73343583 (-) False LOC110528949
XM_036984926.1 mRNA downstream 331228 73141948 ~ 73290110 (-) False LOC110528926
XM_036984929.1 mRNA downstream 351363 73140464 ~ 73269975 (-) False LOC110528926
XM_021611213.2 mRNA upstream 15832 73637635 ~ 73639525 (-) True sfr1
XM_021611234.2 mRNA upstream 53855 73675658 ~ 73711293 (-) False slka
XM_021611222.2 mRNA upstream 53855 73675658 ~ 73711294 (-) False slka
XM_021611226.2 mRNA upstream 53855 73675658 ~ 73711294 (-) False slka
XM_021611228.2 mRNA upstream 53855 73675658 ~ 73711294 (-) True slka
TU89447 other downstream 1369420 72248604 ~ 72251918 (-) True LOC110528794
TU89450 other downstream 1410249 72207929 ~ 72211089 (-) True G80957
TU88304 other downstream 1877529 71743045 ~ 71743809 (-) True G79904
TU88097 other downstream 2150879 71469682 ~ 71470459 (-) True G79700
TU88009 other downstream 2234815 71376285 ~ 71386523 (-) True G79616
TU92060 other upstream 950644 74572447 ~ 74572789 (-) True G83429
TU92810 other upstream 1350409 74972212 ~ 74973321 (-) True fank1
TU93438 other upstream 1906540 75528343 ~ 75528903 (-) True G84713
TU94659 other upstream 2711665 76333468 ~ 76334136 (-) True G85866
TU94594 other upstream 2745490 76367293 ~ 76399956 (-) True ccser2a

Expression Profile