RNA id: TU91846


Basic Information

Item Value
RNA id TU91846
length 233
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G83217
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 74415649 ~ 74415881 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggaggagtaggacaaGGGTACGgctgaaggctataagaactggtcgtcttgtgcgtttggaacagagagtaaaaggagcagagtTATGGGCGAGGAAGAATAGATTTAAGGCATAATATACAGACAAGGTTATGGTagaatgtgaatacagtggaggtaaacctaggcattgagtgacaatgagagaggttttgtctctagaggcaccatttaagccaggtgaggtcaccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91826 lncRNA downstream 24349 74391013 ~ 74391300 (-) True G83197
TU91792 lncRNA downstream 56968 74358151 ~ 74358681 (-) True G83163
TU91794 lncRNA downstream 58830 74356303 ~ 74356819 (-) True G83165
TU91801 lncRNA downstream 65146 74350293 ~ 74350503 (-) True G83172
TU91770 lncRNA downstream 100939 74312503 ~ 74314710 (-) True G83143
TU91847 lncRNA upstream 358 74416239 ~ 74416460 (-) True G83218
TU91907 lncRNA upstream 47932 74463813 ~ 74464105 (-) True G83278
TU91917 lncRNA upstream 56105 74471986 ~ 74472260 (-) True G83288
TU91962 lncRNA upstream 61238 74477119 ~ 74478274 (-) True gnrh3
TU91961 lncRNA upstream 64546 74480427 ~ 74481104 (-) False LOC110529277
XM_021611387.2 mRNA downstream 37495 74348790 ~ 74378154 (-) False mgmt
XM_021611379.2 mRNA downstream 37496 74359740 ~ 74378153 (-) True mgmt
XM_021611333.2 mRNA downstream 181532 74229248 ~ 74234117 (-) True LOC110529206
NM_001160549.1 mRNA downstream 225968 74183813 ~ 74189681 (-) True smndc1
XR_005052844.1 mRNA downstream 329678 74082939 ~ 74085971 (-) False LOC110529148
NM_001124280.1 mRNA upstream 61290 74477171 ~ 74478278 (-) False gnrh3
XM_021611412.2 mRNA upstream 64057 74479938 ~ 74497600 (-) False LOC110529277
XM_021611396.2 mRNA upstream 64057 74479938 ~ 74531625 (-) False LOC110529277
XM_021611404.2 mRNA upstream 64057 74479938 ~ 74531625 (-) False LOC110529277
XM_021611433.2 mRNA upstream 293449 74709330 ~ 74728846 (-) True LOC110529307
TU89447 other downstream 2163731 72248604 ~ 72251918 (-) True LOC110528794
TU89450 other downstream 2204560 72207929 ~ 72211089 (-) True G80957
TU88304 other downstream 2671840 71743045 ~ 71743809 (-) True G79904
TU88097 other downstream 2945190 71469682 ~ 71470459 (-) True G79700
TU88009 other downstream 3029126 71376285 ~ 71386523 (-) True G79616
TU92060 other upstream 156566 74572447 ~ 74572789 (-) True G83429
TU92810 other upstream 556331 74972212 ~ 74973321 (-) True fank1
TU93438 other upstream 1112462 75528343 ~ 75528903 (-) True G84713
TU94659 other upstream 1917587 76333468 ~ 76334136 (-) True G85866
TU94594 other upstream 1951412 76367293 ~ 76399956 (-) True ccser2a

Expression Profile