RNA id: TU92354


Basic Information

Item Value
RNA id TU92354
length 455
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G83718
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 74764604 ~ 74765058 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctccggtagtaattggcaaaccctaaaaaccgctgcacctcctttaccgtggtcggagtcggccaattacgcacggcattaacgcggtcacactccatcatcatccccgagctggaaatgcgataacccaggaaggaaacggctggtttggaaaacacacatttctcagccttgacgtataggtcatgctccagcagtcgcccaagaaccttgcgcaccagggaaacatgcgcggcgcgtgtggcagaataaatcaagatgtcatcaatatagactaccacaccctgcccgtgcaagtccctgagaatctcatctacaaaggattgaaagacggctggagcatttttcaacccatacggcatgacgaggtactcatagtggcctgatgtggtactaaacgctgttttccactcgtctcctccccgaatacgcaccagattatacgcgctcctgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92310 lncRNA downstream 29690 74734368 ~ 74734914 (-) True G83674
TU92137 lncRNA downstream 143774 74620603 ~ 74620830 (-) True G83504
TU92108 lncRNA downstream 162499 74601883 ~ 74602105 (-) True G83477
TU92099 lncRNA downstream 166370 74597976 ~ 74598234 (-) True G83468
TU92064 lncRNA downstream 189250 74575152 ~ 74575354 (-) True G83433
TU92372 lncRNA upstream 15259 74780317 ~ 74780539 (-) True G83736
TU92686 lncRNA upstream 33645 74798703 ~ 74799905 (-) True G84015
TU92693 lncRNA upstream 46114 74811172 ~ 74812111 (-) False G84020
TU92695 lncRNA upstream 46114 74811172 ~ 74811457 (-) True G84020
TU92699 lncRNA upstream 51337 74816395 ~ 74816890 (-) True G84023
XM_021611433.2 mRNA downstream 35758 74709330 ~ 74728846 (-) True LOC110529307
XM_021611396.2 mRNA downstream 232979 74479938 ~ 74531625 (-) False LOC110529277
XM_021611404.2 mRNA downstream 232979 74479938 ~ 74531625 (-) False LOC110529277
XM_021611412.2 mRNA downstream 267004 74479938 ~ 74497600 (-) False LOC110529277
NM_001124280.1 mRNA downstream 286326 74477171 ~ 74478278 (-) False gnrh3
XM_021611491.2 mRNA upstream 206714 74971772 ~ 74975108 (-) False fank1
XM_036985291.1 mRNA upstream 217198 74982256 ~ 74996768 (-) False edrf1
XM_036985292.1 mRNA upstream 217198 74982256 ~ 74996768 (-) False edrf1
XM_036985296.1 mRNA upstream 217198 74982256 ~ 74996768 (-) False edrf1
XM_036985302.1 mRNA upstream 217198 74982256 ~ 74996768 (-) True edrf1
TU92060 other downstream 191815 74572447 ~ 74572789 (-) True G83429
TU89447 other downstream 2512686 72248604 ~ 72251918 (-) True LOC110528794
TU89450 other downstream 2553515 72207929 ~ 72211089 (-) True G80957
TU88304 other downstream 3020795 71743045 ~ 71743809 (-) True G79904
TU88097 other downstream 3294145 71469682 ~ 71470459 (-) True G79700
TU92810 other upstream 207154 74972212 ~ 74973321 (-) True fank1
TU93438 other upstream 763285 75528343 ~ 75528903 (-) True G84713
TU94659 other upstream 1568410 76333468 ~ 76334136 (-) True G85866
TU94594 other upstream 1602235 76367293 ~ 76399956 (-) True ccser2a
TU94870 other upstream 1756027 76521085 ~ 76523481 (-) True G86063

Expression Profile