RNA id: TU92686


Basic Information

Item Value
RNA id TU92686
length 1203
lncRNA type antisense_over
GC content 0.52
exon number 1
gene id G84015
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 74798703 ~ 74799905 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCGCTATGGCATTGCGTACGCTGTTAAGACTTGGAAATGTGATTTTATCCACACAGCTATGGAAATGGGGAGCCATTGAAAGGAATGCTGCTGGATTTGCATGGGTACTTTAGAGTTTTGCCCTGACATGGGGAGATGAAATTCATACCTGGGCTGATATTAAAAGcagggtgtctgtgtgtggaatttcTCAGCCGACGACAGCACAGCTCATCTGCAATTCCATTGTGCTGACTGGCCCCGGAGTATGAGTCGCCTGTTCCTCTGGCTGATGAGAATAACCCTGAGGTAAGATTGTGTGCAGTTAAATCAGATGTTCTATTCTTAATACCATCAGTATCTGCCATTTTGGGGACCTCGTAGCCCCCTTTGATTGATGAAGAGCCTCTGCTGTAACCCACATCAGTCTCTGAGTTGTCCCTTCTATGGGTGCAGCTTAATGCCCCCATAGATCTCCGGAGGTCCTGAAGTGTTTTGGGGTAATCCATAGAGGTTCCAATGTGGGACGAGCCCCCAACATACAGAGACAGGGTGGACCTGTGCATAACCGGCTTTGTGACCTCTGGCTGTCTTATGGAGATAGACAGTGACTTGTCCAGATACAGAACTGTGTTCGCAGACCTCCAACGTACCTCAAGCTGGACGCATGAGCAGAAAGAGGGCTGGAGTGAGAAAGGCCTGAAGGTGCTTCCATTGTCCTTGAGACTGTCCTCACCTGTGTAACTGTGCCTGTGTTCAGGCCAGGCAGTCCTCATCCCTGGCCCTATCATCTGGACCTTGGCACATGCAGAGTAGCTCTGTCTGTACTCTGTCACCTTTACTATGGTGGCCTTGTGTCTGGTCACCACCTCAGAGTGCTTTGGAATGGCTGAGGATAGGACATGAGTCATGACTGGGTTGATGGATGTGGATGACCTGATAGGCAGGATCGGTTGGTGGGGATAATGTGATTGGTTGGCCCCTGACTGGGAGACCCTGCAGGATGCGATGGTGATGGAGGAGAAGCCCGTCTTTGGTCGGCCGCCCAGGACATTAGGGACACTGGCCATCCTCAGCAGGGTTGGACTCCCTCTGTGGGGTACATGTCCACCTCTCTGGGAGTCCCCAGAGTGTGTCGGCCTCATAAGGGATGGTGATGTGGAAGCCCTCTCCCCTTGTCCTCTCCACATGCTCCATGAGGGGGTAATATCCTTGGTGGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92372 lncRNA downstream 18164 74780317 ~ 74780539 (-) True G83736
TU92354 lncRNA downstream 33645 74764604 ~ 74765058 (-) True G83718
TU92310 lncRNA downstream 63789 74734368 ~ 74734914 (-) True G83674
TU92137 lncRNA downstream 177873 74620603 ~ 74620830 (-) True G83504
TU92108 lncRNA downstream 196598 74601883 ~ 74602105 (-) True G83477
TU92693 lncRNA upstream 11267 74811172 ~ 74812111 (-) False G84020
TU92695 lncRNA upstream 11267 74811172 ~ 74811457 (-) True G84020
TU92699 lncRNA upstream 16490 74816395 ~ 74816890 (-) True G84023
TU92765 lncRNA upstream 109650 74909555 ~ 74909951 (-) True G84085
TU92767 lncRNA upstream 113557 74913462 ~ 74913706 (-) True G84087
XM_021611433.2 mRNA downstream 69857 74709330 ~ 74728846 (-) True LOC110529307
XM_021611396.2 mRNA downstream 267078 74479938 ~ 74531625 (-) False LOC110529277
XM_021611404.2 mRNA downstream 267078 74479938 ~ 74531625 (-) False LOC110529277
XM_021611412.2 mRNA downstream 301103 74479938 ~ 74497600 (-) False LOC110529277
NM_001124280.1 mRNA downstream 320425 74477171 ~ 74478278 (-) False gnrh3
XM_021611491.2 mRNA upstream 171867 74971772 ~ 74975108 (-) False fank1
XM_036985291.1 mRNA upstream 182351 74982256 ~ 74996768 (-) False edrf1
XM_036985292.1 mRNA upstream 182351 74982256 ~ 74996768 (-) False edrf1
XM_036985296.1 mRNA upstream 182351 74982256 ~ 74996768 (-) False edrf1
XM_036985302.1 mRNA upstream 182351 74982256 ~ 74996768 (-) True edrf1
TU92060 other downstream 225914 74572447 ~ 74572789 (-) True G83429
TU89447 other downstream 2546785 72248604 ~ 72251918 (-) True LOC110528794
TU89450 other downstream 2587614 72207929 ~ 72211089 (-) True G80957
TU88304 other downstream 3054894 71743045 ~ 71743809 (-) True G79904
TU88097 other downstream 3328244 71469682 ~ 71470459 (-) True G79700
TU92810 other upstream 172307 74972212 ~ 74973321 (-) True fank1
TU93438 other upstream 728438 75528343 ~ 75528903 (-) True G84713
TU94659 other upstream 1533563 76333468 ~ 76334136 (-) True G85866
TU94594 other upstream 1567388 76367293 ~ 76399956 (-) True ccser2a
TU94870 other upstream 1721180 76521085 ~ 76523481 (-) True G86063

Expression Profile