RNA id: TU92479


Basic Information

Item Value
RNA id TU92479
length 1508
RNA type TUCP
GC content 0.40
exon number 2
gene id G83829
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 75112660 ~ 75114190 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttcctttatttttcctGTCCGTGCCACACACGCTAAAGCGAGGTCAGGCTTTTACCTAAATCCACAAACCATCATAGTCAGATCTGCAACTATTGCATAAATACAAAGCAACATACAGGTGATGCTCAAAATGTGTATAACTAGATTGTAATACACCAAAATAAAAGTTACAGTACTCAACGGCAAGGAAACCCAACAGAAACTTCCTTCACTGCTAAAGCATGATTTTACAACTTTGGTTTATGTGCAGTCTCTCACAAAGACCTTAAACTCAATTCAAGATGTTCACATATACATTAGAGAAAAATAAAACACAGGTACCATGGGTTAAACAATATGACAAGAAACTGGTGCGTTTCTGGTTTAATGTTGACTTTGAATGTCTTACTCTCTCCTCCCAAAAATCACCAACCATTCAAATGAGATACTGAATCACACGAGAACTGAAGTCAACTTTTACAGATGGTTGTTATTTTCCTCACCGCAAAAATGTTAGTGCAgcctaaaaaatattttttaaataataaatgaAAGAAAAATACAGAGAATCAAAGCTCTCCTTAGCTCAAAAGCTCCCAAACAAATAAACATGTAAAATTGGTTTGGAGATTAAATTAAAAACAAGACATTTCATTTCAGCCAGTCGGAAAAAAAGGTAAACTAAACATCCATGTGTATGATCTGTCTCCTAAACCTTAGTGACTTTGAACTGCCATTTCAAAGATTAATAAATTACCTTTATTCAAGCAGTTATATTCATATAGAAATGTCTTTCAATAAATGTGCAGTGCTTAGTATTAAGAATTAAGTTCATATTACACAATCGAGCCAGTTCTCCATTGGGTCCCATGACTCAAAGATATGTTGGCTTAGTCACTGCCCATCAAAAAAAACAAGCCAACTATTTCAACTGGAAAAACAACAGTAAGTGTGCTTCGTCAGTGCCCATAATGAACAGAAAGATGTTTGAATCGATGCTGGTATATTTCCTTATACTTCTTTTTTTAAACAACCACATGCATTTACACTTTTGGATAAAGATTTTACATTAGAAAATCAATAAAGATAAATAGCATTAGTATACTATAATCCTTTATTTCCCATCATCCCCAGGTCTTTTTGCAGCAGTGGACCATTTCTTCTGTCAGTCTAAGATATTCGTATGTGTCCTCTGCCAGGGTGCGGTGAGGCTCAGGATTCCCTCCCCTTTCAGTTTGTCCGTGTCAGgaaagggggggaaaaaaaaaacgAGGCTGGACCCCTGCCTCTGGGGATCCCGCCTATACCCGATTTGtcactcatcctcctcctcctcttcctcgccGTCGGAGAGCGAGGCGCAGGGGCGGATCTGTCGGTAGCCGTCCAGCCACTTCTCCACCATCTGTGTGACCAGGGGGTGGTTCCGCCTGCGGGAGCTCTTCTGCATGGCCACCAGCACTCCGCCCTCCGTCACGCAGCAGTCCAACCACTCTCTCAGCAGCTTCTCCTGCTGCTCTTCATTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92391 lncRNA upstream 142031 74968428 ~ 74970629 (+) True G83755
TU92509 lncRNA upstream 180082 74932111 ~ 74932578 (+) True G83858
TU92499 lncRNA upstream 198965 74913481 ~ 74913695 (+) True G83848
TU92498 lncRNA upstream 199985 74912356 ~ 74912675 (+) True G83847
TU92497 lncRNA upstream 200673 74911780 ~ 74911987 (+) True G83846
TU92480 lncRNA downstream 20892 75135082 ~ 75137791 (+) False G83830
TU92481 lncRNA downstream 20892 75135082 ~ 75137382 (+) True G83830
TU92644 lncRNA downstream 26339 75140529 ~ 75140814 (+) True G83976
TU92646 lncRNA downstream 26686 75140876 ~ 75142233 (+) True G83977
TU92647 lncRNA downstream 29726 75143916 ~ 75144255 (+) True G83978
XM_036985346.1 mRNA upstream 257 74996783 ~ 75112403 (+) False LOC110529380
XM_036985351.1 mRNA upstream 257 74996783 ~ 75112403 (+) False LOC110529380
XM_036985342.1 mRNA upstream 257 75014638 ~ 75112403 (+) False LOC110529380
XM_036985318.1 mRNA upstream 257 75062705 ~ 75112403 (+) False LOC110529380
XM_036985339.1 mRNA upstream 257 75062705 ~ 75112403 (+) False LOC110529380
XM_036985380.1 mRNA downstream 40978 75155168 ~ 75182737 (+) False LOC110529425
XM_036985385.1 mRNA downstream 54372 75168562 ~ 75182737 (+) False LOC110529425
XM_036985376.1 mRNA downstream 55598 75169788 ~ 75182737 (+) True LOC110529425
XM_036976165.1 mRNA downstream 116548 75230738 ~ 75233988 (+) True LOC110532673
XM_021611656.2 mRNA downstream 161795 75275985 ~ 75311494 (+) False LOC110529439
TU92487 other upstream 202854 74909225 ~ 74909806 (+) True G83836
TU90667 other upstream 1540923 73551616 ~ 73571737 (+) False G82111
TU90669 other upstream 1540923 73571066 ~ 73571737 (+) True G82111
TU87354 other upstream 4036558 71036470 ~ 71076102 (+) True ccdc85a
TU86384 other upstream 4457699 70571665 ~ 70654961 (+) True G78121
TU92648 other downstream 30674 75144864 ~ 75145512 (+) True G83979
TU94291 other downstream 1343934 76458124 ~ 76459823 (+) True LOC110529610
TU94822 other downstream 1517555 76631745 ~ 76635936 (+) True G86019
TU95475 other downstream 2009745 77123935 ~ 77124427 (+) True G86614
TU96076 other downstream 2455825 77570015 ~ 77570470 (+) True G87159

Expression Profile