RNA id: TU93438


Basic Information

Item Value
RNA id TU93438
length 561
RNA type TUCP
GC content 0.47
exon number 1
gene id G84713
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 75528343 ~ 75528903 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcccttccttggacactgtgctaactaacctccaaacaaacttcaatgccatacaacactcctaccgtggcctccaactgctcttaaacgctagtaaaaccaaatgaaTGCATTTCAACCGTTTGCTGGCCGCACCCGccagcccgactagcatcaccaccctggacggttccgacctagaatatgtggacaactataaatacctaggtgtctggctagactgtaaactctccttccagactcatattaaacatcaccaatccaaaatcaaatctagaataggctttctatttcgcaacaaagcctccttcactcatgacgccaaacttaccctagtaaaattgactatcctaccgatcctcgactttggcgatgtcatctacaaaatagcttccaacactctactcagcaaactggatgcagtctatcacagtgccatccgttttgttaccaaatcaccttataccacccaccactgcgacctgtatactctagtcggctggccctcactacatattcgtcgccagacccactggctccaggtcatctataagtctatgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93429 lncRNA downstream 4067 75524066 ~ 75524276 (-) True G84704
TU93426 lncRNA downstream 5816 75522295 ~ 75522527 (-) True G84701
TU93249 lncRNA downstream 113677 75414330 ~ 75414666 (-) True G84551
TU93244 lncRNA downstream 115293 75412837 ~ 75413050 (-) True G84546
TU93216 lncRNA downstream 133667 75394443 ~ 75394676 (-) True G84518
TU93442 lncRNA upstream 3365 75532268 ~ 75532479 (-) True G84717
TU93446 lncRNA upstream 6162 75535065 ~ 75535397 (-) True G84721
TU93445 lncRNA upstream 8113 75537016 ~ 75537571 (-) True G84720
TU93508 lncRNA upstream 63859 75592762 ~ 75593143 (-) True G84779
TU93528 lncRNA upstream 75399 75604302 ~ 75604576 (-) True G84798
XM_021611685.2 mRNA downstream 25062 75500710 ~ 75503281 (-) True LOC110529484
XM_021611670.2 mRNA downstream 33679 75492016 ~ 75494664 (-) True LOC110529482
XM_021600288.2 mRNA downstream 179999 75345113 ~ 75348344 (-) True LOC110522123
XM_021611577.2 mRNA downstream 379553 75135079 ~ 75148790 (-) False LOC110529412
XM_036985375.1 mRNA downstream 380551 75135079 ~ 75147792 (-) False LOC110529412
XM_021611717.2 mRNA upstream 27242 75556145 ~ 75574946 (-) True LOC110529486
XM_021611729.2 mRNA upstream 80444 75609347 ~ 75612396 (-) True vkorc1
XM_036985519.1 mRNA upstream 795628 76324531 ~ 76399997 (-) False ccser2a
XM_036985521.1 mRNA upstream 795628 76324531 ~ 76399997 (-) False ccser2a
XM_036985524.1 mRNA upstream 795628 76324531 ~ 76399997 (-) False ccser2a
TU92810 other downstream 555022 74972212 ~ 74973321 (-) True fank1
TU92060 other downstream 955554 74572447 ~ 74572789 (-) True G83429
TU89447 other downstream 3276425 72248604 ~ 72251918 (-) True LOC110528794
TU89450 other downstream 3317254 72207929 ~ 72211089 (-) True G80957
TU88304 other downstream 3784534 71743045 ~ 71743809 (-) True G79904
TU94659 other upstream 804565 76333468 ~ 76334136 (-) True G85866
TU94594 other upstream 838390 76367293 ~ 76399956 (-) True ccser2a
TU94870 other upstream 992182 76521085 ~ 76523481 (-) True G86063
TU94946 other upstream 1077779 76606682 ~ 76608354 (-) True G86132
TU95290 other upstream 1338001 76866904 ~ 76867598 (-) True G86448

Expression Profile