RNA id: TU94312


Basic Information

Item Value
RNA id TU94312
length 519
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G85534
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 75832155 ~ 75832835 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTTTCAGAACGACGAAAGTGAACAGCGCCTCAGGAATACGCTACAGGACAGCTTGACTTGACTGAAGGAGCAATCACCTGTAGATCGCAGACAACGAAGGAATTCATCTATTCAAATACTTTTACATTGAAATTGTTGTTTAAATAATTTATTGAGTTGTCTAACAAATTAATTCGGTTGTATGTTTTTGTCGAATTTCATAACTTCAATAGGACACATCATTTGGTCTAACATGCGTAGCTTACATTCGACTGAAACATTAACCAAGCTCACCCAGCTGTAGGCTACAAATATAGgaacttaatttgatcactcttttgttgctgagagtTTTCCTGTTTTcctgcAACAAtacaggtcaaattaagatcctacatctgtatattcACCTCAATCATTCCACCACCTCTACGACTATCATATATGTAGGCTACGTCACCCATCTAACTCCCACCCTGTCCTTTTGGAACACAAACATCCAAGCGCCAATGCCCTAAAGTTCCGTTCAAATTACAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93787 lncRNA downstream 47327 75784547 ~ 75784828 (-) True G85036
TU93786 lncRNA downstream 47651 75784220 ~ 75784504 (-) True G85035
TU93751 lncRNA downstream 97508 75734429 ~ 75734647 (-) True G85001
TU93528 lncRNA downstream 227579 75604302 ~ 75604576 (-) True G84798
TU93508 lncRNA downstream 239012 75592762 ~ 75593143 (-) True G84779
TU94559 lncRNA upstream 343839 76176674 ~ 76177923 (-) True G85772
TU94598 lncRNA upstream 394822 76227657 ~ 76227951 (-) True G85806
TU94605 lncRNA upstream 410667 76243502 ~ 76243839 (-) True G85813
TU94606 lncRNA upstream 411097 76243932 ~ 76244296 (-) True G85814
TU94626 lncRNA upstream 442540 76275375 ~ 76275621 (-) True G85834
XM_021611729.2 mRNA downstream 219759 75609347 ~ 75612396 (-) True vkorc1
XM_021611717.2 mRNA downstream 257209 75556145 ~ 75574946 (-) True LOC110529486
XM_021611685.2 mRNA downstream 328874 75500710 ~ 75503281 (-) True LOC110529484
XM_021611670.2 mRNA downstream 337491 75492016 ~ 75494664 (-) True LOC110529482
XM_021600288.2 mRNA downstream 483811 75345113 ~ 75348344 (-) True LOC110522123
XM_036985519.1 mRNA upstream 491696 76324531 ~ 76399997 (-) False ccser2a
XM_036985521.1 mRNA upstream 491696 76324531 ~ 76399997 (-) False ccser2a
XM_036985524.1 mRNA upstream 491696 76324531 ~ 76399997 (-) False ccser2a
XM_036985527.1 mRNA upstream 491696 76324531 ~ 76399997 (-) False ccser2a
XM_036985534.1 mRNA upstream 491696 76324531 ~ 76399997 (-) False ccser2a
TU93438 other downstream 303252 75528343 ~ 75528903 (-) True G84713
TU92810 other downstream 858834 74972212 ~ 74973321 (-) True fank1
TU92060 other downstream 1259366 74572447 ~ 74572789 (-) True G83429
TU89447 other downstream 3580237 72248604 ~ 72251918 (-) True LOC110528794
TU89450 other downstream 3621066 72207929 ~ 72211089 (-) True G80957
TU94659 other upstream 500633 76333468 ~ 76334136 (-) True G85866
TU94594 other upstream 534458 76367293 ~ 76399956 (-) True ccser2a
TU94870 other upstream 688250 76521085 ~ 76523481 (-) True G86063
TU94946 other upstream 773847 76606682 ~ 76608354 (-) True G86132
TU95290 other upstream 1034069 76866904 ~ 76867598 (-) True G86448

Expression Profile