RNA id: TU94598


Basic Information

Item Value
RNA id TU94598
length 295
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G85806
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 76227657 ~ 76227951 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctgcatacatttgaacttcagacccagtacagacagaaggcagatcattaatgtacaggctgaacaggaggggccccagtattgacccttggggcacacccacatcatagctacgagtgggcgacagctcattgctcactctgacacactgagttctgccttcaaggtatgatttcatccatctcaaggcatcaggggaaaagttgaacttggacaattttgtgatgagaatctcatggttaccagtatcaaaagccttccttaggtccagaaacacagccccaacagcacccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94559 lncRNA downstream 49734 76176674 ~ 76177923 (-) True G85772
TU94312 lncRNA downstream 394822 75832155 ~ 75832835 (-) True G85534
TU93787 lncRNA downstream 442829 75784547 ~ 75784828 (-) True G85036
TU93786 lncRNA downstream 443153 75784220 ~ 75784504 (-) True G85035
TU93751 lncRNA downstream 493010 75734429 ~ 75734647 (-) True G85001
TU94605 lncRNA upstream 15551 76243502 ~ 76243839 (-) True G85813
TU94606 lncRNA upstream 15981 76243932 ~ 76244296 (-) True G85814
TU94626 lncRNA upstream 47424 76275375 ~ 76275621 (-) True G85834
TU94644 lncRNA upstream 71425 76299376 ~ 76299723 (-) True G85851
TU94645 lncRNA upstream 72285 76300236 ~ 76300479 (-) True G85852
XM_021611729.2 mRNA downstream 615261 75609347 ~ 75612396 (-) True vkorc1
XM_021611717.2 mRNA downstream 652711 75556145 ~ 75574946 (-) True LOC110529486
XM_021611685.2 mRNA downstream 724376 75500710 ~ 75503281 (-) True LOC110529484
XM_021611670.2 mRNA downstream 732993 75492016 ~ 75494664 (-) True LOC110529482
XM_021600288.2 mRNA downstream 879313 75345113 ~ 75348344 (-) True LOC110522123
XM_036985519.1 mRNA upstream 96580 76324531 ~ 76399997 (-) False ccser2a
XM_036985521.1 mRNA upstream 96580 76324531 ~ 76399997 (-) False ccser2a
XM_036985524.1 mRNA upstream 96580 76324531 ~ 76399997 (-) False ccser2a
XM_036985527.1 mRNA upstream 96580 76324531 ~ 76399997 (-) False ccser2a
XM_036985534.1 mRNA upstream 96580 76324531 ~ 76399997 (-) False ccser2a
TU93438 other downstream 698754 75528343 ~ 75528903 (-) True G84713
TU92810 other downstream 1254336 74972212 ~ 74973321 (-) True fank1
TU92060 other downstream 1654868 74572447 ~ 74572789 (-) True G83429
TU89447 other downstream 3975739 72248604 ~ 72251918 (-) True LOC110528794
TU89450 other downstream 4016568 72207929 ~ 72211089 (-) True G80957
TU94659 other upstream 105517 76333468 ~ 76334136 (-) True G85866
TU94594 other upstream 139342 76367293 ~ 76399956 (-) True ccser2a
TU94870 other upstream 293134 76521085 ~ 76523481 (-) True G86063
TU94946 other upstream 378731 76606682 ~ 76608354 (-) True G86132
TU95290 other upstream 638953 76866904 ~ 76867598 (-) True G86448

Expression Profile