RNA id: TU94185



Basic Information


Item Value
RNA id TU94185
length 235
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G85413
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 76280350 ~ 76280584 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGATTATCTAGAAAAAGCAGCAGAGTTGCGCATGAGGTTTCTAAGAAGAGGCTATCCCTCACAATGTGTGGATGAAGCTCATAATTTGGCATTGGAAAAAACACGAGATGAACTGCTACAAAAAGGACCCgctaaagctaaagaacactctgtaatgttcacaaccACATATACTTTGAATTCGCGAAAAGTGGGAGGTGTGGTCAAGAAACACTGGCATATTTTATCATCGGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU94161 lncRNA upstream 26718 76253395 ~ 76253632 (+) True G85391
TU94156 lncRNA upstream 32953 76247192 ~ 76247397 (+) True G85386
TU94153 lncRNA upstream 36604 76243538 ~ 76243746 (+) True G85383
TU94144 lncRNA upstream 50472 76229595 ~ 76229878 (+) True G85374
TU94143 lncRNA upstream 50995 76229132 ~ 76229355 (+) True G85373
TU94203 lncRNA downstream 19542 76300126 ~ 76300492 (+) True G85431
TU94204 lncRNA downstream 20214 76300798 ~ 76301289 (+) True G85432
TU94221 lncRNA downstream 49644 76330228 ~ 76332586 (+) True G85449
TU94222 lncRNA downstream 52340 76332924 ~ 76333208 (+) True G85450
TU94223 lncRNA downstream 54080 76334664 ~ 76334952 (+) True G85451
XM_036985516.1 mRNA upstream 102372 75833931 ~ 76177978 (+) True LOC110532683
XM_021611780.2 mRNA upstream 556197 75695434 ~ 75724153 (+) False LOC110529516
XM_021600418.2 mRNA downstream 123597 76404181 ~ 76416951 (+) True LOC110522192
XM_021611837.2 mRNA downstream 139843 76420427 ~ 76433438 (+) False LOC110529556
XM_021611846.2 mRNA downstream 139843 76420427 ~ 76433438 (+) False LOC110529556
XM_021611876.2 mRNA downstream 145063 76425647 ~ 76433438 (+) False LOC110529556
XM_036985595.1 mRNA downstream 145063 76425647 ~ 76433438 (+) False LOC110529556
TU92648 other upstream 1134838 75144864 ~ 75145512 (+) True G83979
TU92479 other upstream 1166160 75112660 ~ 75114190 (+) True G83829
TU92487 other upstream 1370544 74909225 ~ 74909806 (+) True G83836
TU90667 other upstream 2708613 73551616 ~ 73571737 (+) False G82111
TU94291 other downstream 177540 76458124 ~ 76459823 (+) True LOC110529610
TU94822 other downstream 351161 76631745 ~ 76635936 (+) True G86019
TU95475 other downstream 843351 77123935 ~ 77124427 (+) True G86614
TU96076 other downstream 1289431 77570015 ~ 77570470 (+) True G87159
TU98716 other downstream 3268433 79549017 ~ 79549651 (+) True G89667

Expression Profile