RNA id: TU94221


Basic Information

Item Value
RNA id TU94221
length 2359
lncRNA type intronic
GC content 0.43
exon number 1
gene id G85449
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 76330228 ~ 76332586 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcccatagctccttccaccagcctcctctgctcctAGTCCTTAACAAGCTTCATGCTTTCAAGTCCTTTATTGTCTGTAAACCTGCAGTCAATAAAAAGCGACTATCTTGTGATGATCATCCTCCTAAATCCTACAAATCCTTAGGAGGCTGCCATCTTTATGATCTAGCATGAGTCAGTACTCTAGTTGTGCTCCAGGGCCCTGTGTCAGGGTGGGGCTGGGTtgggcagtcaattcaggaagtgatttgaatttAAAATCAGAAGAAAAAAATGTGCTTCTACCTTTCAGTTTATTGAGAAGTCATTAAAAATAAGTATCCTATTTCGATTATTGAATTGTATTGttggtttacttcctgaattgactgcctacaaactgaattgagcccaaccctgctCTGTGTGAATCCCTCCAAGCCAAACTTATGATGGCCCTGGTCTGGCCAAGGCAGTCCGCCTCAAACATCCAACAGGAGACCAGGGAGGCGTCTGTTCCAGCAGTAACCTGACAGAGGCAATGGGATGACTAGGCCCACAGCTCCACCTGGTGGTCATCTCCCGTACTACACCAATCGGATATGGTAAACATCATGATTGTCTTTGTTGATTATGCTTTTTATTAGATTACCATGAGTACCTCCTGCCTGCAATTAATTTTTGATAACATTCTAGACATTGACAAGCACAACCACCAAAAATAACAAATGTAACAAAATACATtacatcaccaaaagtatgtggacacctcttgtcgaacatctcattccaaaatcttgggcattaaaatatggagttggtccccccccttttctgctataacagccagcactcttctgggaaggattttcactagatgttggaacattgctgtggggacttgcttccattcagccacaagagcgttagtgaggttgggcacttatgttgggcaattaggcctggctcgcagtcggtgttccaaatgtgttcgatggggttgaggtcagggctctgtgcagaccagtcaagttcttccacaccaactGTCGACAAATCATtaatgtatggacctcgctttgtgcaagggggcattgtcatgctgaaacaggaaagggccttccccaaactgtttccacaaagttggaagaacagaatcatctagaatgccattgtatgctgtagcattaagatttcccttcactggaactaaggggccaagtccgaacaataaaaaataagccccagaccatttttcGTCCTCCACTaatctttacagttggcactatgcattggggaatGTAGCACTCTCCTGGCatcaccaaacccagattcgtctgtcagactgccagatggtgaagtgtgattcatcactccagaaagcatgtttccattgctccagagtccaatggctcaacaccactccagctgacgcttggcattgcgtgtggtgatcttaggcttgtgtgtggctgctcggccaggGAAACCCATTTCGTGAAGCTCCCGACGAAACAGTtcctgtgctgacgttgcttcctgaGGCAAAAAATTGacagactgacttgttggaatggtggcatcctatgatggtgccacgttgaaagtcactgagctctttagtaaggccattctactgccaatgtttgtttatggagattgcatggctgtgtgctcaaattttatacacctgtcagcaaccggtgtggctgaaatagccaaatacactaatttgaaggggtgtccacatacttttgctgaTGTATTGTATGTATGAAAAAATAGCACACCATATTGAAATCTAAAGCATAAATGTGTAATTAAATGAGAAATCAAGTGAACAGTTTTCTATCCCACAGGAGTGGCCAGTGTATAAATAAGAGGTTCTACGTCTGTGATTTTGAGTTTATAACACCATTTACAAGTATCTACCCGGGCTATCAAACCAATCTCAACAACCCATCCCACTGTGTCAATAAAACTACAGTGATTTAAGCATAATGAGTGCAGAAGGACCTAGATATTGTGGAATTGAAAAATTATACTAATTTAGCTCCCTGGAAATCCCCCTATTATAACCCTCTGAATATTGCCAATGATGATCATTATCTATTTCAGCTCTAGTTTAGTGCACAATCGTATATTGGTTGCTGCGAAAATAGTGGCAATTTCAATTTTgtctatattatactgctcagatTAGAGCCAATGATACAGGGGGAGAGAAGCCTGATTGCTTTCATTTGTCGACTGCTGGCTTAGCTAAACTGTTTGTGATTACATAGTGGGACAGCGAAAGCTGACAACAGCGATAATGGGGCTTCAAATACATGTGGCCTTGTTCAGGAGTTGTACTTTTTTTTTGAAAGCCAATTTAAA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94204 lncRNA upstream 28939 76300798 ~ 76301289 (+) True G85432
TU94203 lncRNA upstream 29736 76300126 ~ 76300492 (+) True G85431
TU94185 lncRNA upstream 49644 76280350 ~ 76280584 (+) True G85413
TU94161 lncRNA upstream 76596 76253395 ~ 76253632 (+) True G85391
TU94156 lncRNA upstream 82831 76247192 ~ 76247397 (+) True G85386
TU94222 lncRNA downstream 338 76332924 ~ 76333208 (+) True G85450
TU94223 lncRNA downstream 2078 76334664 ~ 76334952 (+) True G85451
TU94230 lncRNA downstream 11161 76343747 ~ 76344203 (+) True G85458
TU94285 lncRNA downstream 94335 76426921 ~ 76429453 (+) True LOC110529556
TU94297 lncRNA downstream 116464 76449050 ~ 76449561 (+) True G85519
XM_036985516.1 mRNA upstream 152250 75833931 ~ 76177978 (+) True LOC110532683
XM_021611780.2 mRNA upstream 606075 75695434 ~ 75724153 (+) False LOC110529516
XM_021600418.2 mRNA downstream 71595 76404181 ~ 76416951 (+) True LOC110522192
XM_021611837.2 mRNA downstream 87841 76420427 ~ 76433438 (+) False LOC110529556
XM_021611846.2 mRNA downstream 87841 76420427 ~ 76433438 (+) False LOC110529556
XM_021611876.2 mRNA downstream 93061 76425647 ~ 76433438 (+) False LOC110529556
XM_036985595.1 mRNA downstream 93061 76425647 ~ 76433438 (+) False LOC110529556
TU92648 other upstream 1184716 75144864 ~ 75145512 (+) True G83979
TU92479 other upstream 1216038 75112660 ~ 75114190 (+) True G83829
TU92487 other upstream 1420422 74909225 ~ 74909806 (+) True G83836
TU90667 other upstream 2758491 73551616 ~ 73571737 (+) False G82111
TU94291 other downstream 125538 76458124 ~ 76459823 (+) True LOC110529610
TU94822 other downstream 299159 76631745 ~ 76635936 (+) True G86019
TU95475 other downstream 791349 77123935 ~ 77124427 (+) True G86614
TU96076 other downstream 1237429 77570015 ~ 77570470 (+) True G87159
TU98716 other downstream 3216431 79549017 ~ 79549651 (+) True G89667

Expression Profile