RNA id: TU94869



Basic Information


Item Value
RNA id TU94869
length 6253
lncRNA type antisense_over
GC content 0.44
exon number 6
gene id G86063
representative False

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 76516251 ~ 76523481 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCCACACTCCCATtcacattctctcacacacacaccttattggCTGCCAGGATTCTGAAGGATGCCACGACCTGGTCGGCGGTGTCTGTGTCAGTGGTTTCTCTGGTCATAAAATCGATAAAGGATTGGAAAGACACCATGCCAGTGGCACTGGGATCTACCAGCATCATGATGCGGGCAAATTCCACTTCACCCAATCATAACCCATGGAGATCAGACAGGCCCTAAAGTCATCAGTGTCCATCGCCCCGTGTTTCTTCTGTAGTCAGAGGTCAAGGGTCGTAGGGTGGAGGTTGGGAGTGGGTCACCGCACAGGGATGAGAAGGGATGGGacagggaggagaaggaagaccAAGAGAAGGTGGATGGCAGAGCAGTGGAGATCGGGAAGGGGAGAAGGCCAAAGCTAACACAGAGAAATGGACACAGACACAACCAGACAGATggacacagtgacagtaacaTTAGAAGACATGGAGTGAGAGACAATAAATACTTTAGGAGTCAATTCTAAATGAACTGTCATAACAGGCCAAAGCTGCTGCCACCAACATTGTCATGCTGTAGAGCCCAACTGTCAAAATATCGATACAACTAAAAACATATGAGAGGTAGCAGCAGGTGTGGTCTACTCTAGAAGGGATGGAAGAAGGCCAAGTCATCAGCGAGAGGTCAGTCAGGGATCATGAAAGTTTAGAGGTCAGTAGGGTTGAGTACCTGATGGTCATTGCCCACATGACCCAGGCTGATCAGACAGGCCATGAACTCCTCACAACGCAGTTTGCCTGTGTTCTCCTGGGGCCAGGTGTTAGAGGGGGTGTTAGTCACACTCAgaggtgtctctctctcacacacatgcaagTGTTTATAACATATAGCATTACAACAATGTGGAACCAATATCAAATACTTTGTTTTTTTATAGACCTGTACATTACACTATCATACAATAGTTGTTGTATTATATTTTTTAGCTGTCTAAACAACTAAGCCCAGAGAGCAGTGACCATAGTACAGTATCAACAGTGGTATTATGCTACTTAACATGCCATTCAGGTTAAATGTTAATATATGAATCAGAGAACCGGGAGTACAGGAAGCGGAATGAGCACTGTACCCGATCAAAGTGGTTGAAGGAAGAGCGGAACTCGTGCATCTGTTCCTGGCTGATGCCCTTGGCATCACGGGTCAGGATCTGGGTCTCGATCTCGTTGATGGTGCGGGCGATGGTGGTGAGGAGGAGCTCCCAGCCCACACGGATGTGCTCATAGTGTAGTTGGTGTGCTTGTTGTCAAACACCAGAGACTCCTGGATGAGCTGGTGGTCTCCCTCCAGCTTGTCGATGTTGGGCTTGTAGGTGACGATGACGTGCTCAAACTGCTTCAGCTGGGTCATCTGGTCCTCCAGGGTACCACCCACCTCCAGGGAGCAGTGGCCAATCTCCTGTCAGAACCACACACATGTGCAATTCAGGTTTTTGTTCCAGATACCCctagaccagggctctccaaccctgttcctgaagagctaccatcctgtaggttacAACCAgagagtagctctccaggaacagtgttAAGAGACCCCTGCCCTAGACACTAAACAGATGGCTGACTCTCTGACCTCCATCCTTGTCTGTATCCATGGTCCGATGAGGTTAGCCTGGACAGCAAACTGCCGTCTCAGCCTCTCGCTAGCATGCTGCCGGGCTAGCTCTTCCTGGAGGGAGCCTTCTCTCTGGGGAACCAGCTTCTTCACCTGTCCCACTTGGCGAGGAGTTCCTCGGTGGTGATGGTGCTGTAGGGGTTGATGAGGTTGGCCTTGATGCCGTAGCTCTGGGAGATCTTCTGCACCTCCATGTGGATCCCCAGGATggcctgtctctctccgtctgcctCTGGGAGGGTGGCCTTGAACTGTTCATGGGAAGAGATCAGGCTCtgGGACCTCATCGATAGTGTGTACAATAAACATGTCCTGCAGATCCTCCATGGCCCCTTCCATCCAGTTGTTGAAGGGTGCTGATCTCTTGGCAAACTCCAGGAACAACTGATCAATGGTTTCCAGCAACTTCTCTGTCCTCTGGAaaacaggagagaaaaaaacacttgTCATTAATCTCATTGACAATTCATCAACATTGCCTGTTTGGACTGCTAATCCCAGGATGCATCACATTGACATGACCCAATTGAATGCTGAGTTGGCGAGGTGGTCTGCATGGATTAGACCCCTTCCTTTGGGCAGGGGGAGGGGGCAGACAGCAGCCCATTTGAGTCACCCTAATCCCAGGCCTGGCTGTTTGTCTTGACAAATTTGTAGGTCATGAGTGCCCAGTATGGATCAGAGGAAAAGGACTGTGGGCATCCTGCCAGCCAGATGCTGGACAGGTAAccatatctatatacagtgccttcagaaatgattcataccccttgacttattccacgttttgttgtgttacagccttaattcacccatctacacacaataccccataatgacaaagtgaaaacatgttttattgaaaatgcaatacagaaatacctaatttacataagtctctaagaactttcCACACCTGGCTTTtgcaacatttgtccattattTTGTAAAAActgttcaagctctgtcaacCATTTTCACATCtagccatatattttcaagtagatttaagtcaaaactgtacctcggtcactcaggaatattcacttcttggtaagcaactccagtgtagattcggtcttgtgttttaggttattgtcctgctgaaaggtgaattcatctcccagtgtctggtggaaagcagactgaaccaggttttcctctaggattttgcctgtgcttatctctattccatttattttttatcctgaaatactacccagtccttaacgattataagcatacccataacatgatgctgccaccactattcttgaaaatatggagagtgatacttagtaatgtattgtactggatttgccccaaacatataacactttgtattcagaaaaaaaagttaatttgCTTTGACACAATTTTTGCAGTACTACTTTAGCgccttgttgtaaacaggatgcatgttttggaatgtttttattCTGAGCTGGTTTCattcttttccctctgtcaattagtttaatattgtgttagggcgtgatagtgacttgggtgggtcatctaggtgattaatggtttatgttggcctggtatggttcccaatcagagacagctgtttatcgtatgtggaactctacgcacgctgcgccttggtccgctcatttcaaCGATCGTGACAACgacaatattgttgatccatcctcagccattaaactctgtaactgttttatagtcaccattggccttatggcaactgagttaggaaggaaggCTGTATCTTTGCAATGACTGggagtattgatacaccatcccaagtgtaattaataacttcaccatgctcaaagggtttTCAATATCTGCTATTTACATTTttaaccatctaccaataggttcccttctttgcgaggcattggaaaacctccctggtctttgtggttgaatctgtgtttgaaattcactcctccactgagggaccttacagataactgaatgtgtggggtacagagatgaggtagttattcaaaaatcatgttaaacacttattgcacacaaagtgagttcatgcaacttattatgtgacttgatgAGAAAAtgatttactcctgaacttatttaggattgCCACAACAAAGTGGtttaatacttattgactgacGACATTGCAGCTtctcatgttttatttatttgtaagcagttctaaaaacacaattccactttgacattatgggttattgcgTGTTTAGGCCAGTGACCATAAATCTCAATATAATATAattgaaattcaggctgtaacacaacttcatgtggaaaaagtcaaggggtgtgaatactttctgaaggcactgtatatgtgccaTCAGTAGACTAAGTGGACCAATTACTCCACCCTCCTCAATCAGCTGTGTATTCATATCTCACCCCTAGCTATCTCAATATAATATACATGAGATTTAGCATTACTATGGGCTAAGTTGTCCTGTGAACAATCCGCCTCACCCCAAGGTAACGTCATTCACTGCCTTACCTCTTCAGCTCTCTTCTGGATTCATGGAACTGGTTCTCATTCCCACACTAccaagctgtactgtgctggCTTACTTTTCACTTGGCACAACAGTTTAGCCAGTTTACCTTAGCTGGGAATATCACATGTCATGTCCCAAACTTCAACCCCCTGCACTCACCTccagagcctctctcctcttctgggTCAGTGTACCAAGTTGATCCCACAGGTCACAGATTCTCTGGCACCTCTGGTTGACAGCAGCCACATCATAATAGTCCAGCTCACTGCACAACACCACAGGCAGCATATAGGTCAATGAAGAGCAACTTCAGACGGTTTGgttgtcacactctgaccattatttgcgttgtttgtttctatgttttgtttggtcagggtgtgatatgagtgggcattctatgttgcatgtctagttagtctgtttctatgtgttttggcctgatatggttctcaatcagtggcaggtgtttgtcgttgtctctgattgggaaccatatttaggtagcctgttttgtattgtggttcgtgggttattgtctatgtgatgttgcatgttagcactcagtttctatagcggtcacgttcgtctggttagtttgttttgtttttttcagtgTACTTCTTGTTTTTTCGTCCATTCATTAAAgtatgcattcacaccacgctgcgctttggtctcctcaatacGACGATTGTGACATTGGTATTATTTAAGAAGAATTCCAGTCGCAGTCCTTGTCAAAGCCATGATTTTAGGAATAGGATTTGGTTGGGATGATGGTTAGGAGGGTTAGAGGttccttttttctcaatttccgcctgactgacgtgcccacagtaaactgcctgttgctcaggccctgaaatcaggatatgcatataattggtaccattggaaagaagacactttgaagtttgtagaaatgtagGTGAGTAAAAAATAATGTAGGTGAGtaaaacacaatagatatggtacgAGAAAATCCAAAAAAAAACAACgaattcttttttttttgagagcccatgctcttacaatggaacgTATAGGGAATTAATTCAATCCTATGACTTCCACTAGGTGTCAGCACTCAATGTTCAAGgcttcaggcttgtttcttccaaaacgagtaAGAATAATGAGTTTAactacagggacacagtcttggaaatttgtgTGTGAGCGCGCAATAAAGAGAACACGCACCTGCTAATattggtttcctattgaacatacatacatacttgttgaaacaaaggttaggggtagattttcggattcctatCTTGGcatgttgaatgagtggattactcaaatcgatggcgccaactaaactgactttttgggatataaagaagggttttatctaacaaaatgactaCATGTTATacctgggaccctttggatgacaaatcagaggatgattttcaaaaagtaagtgaatatttaatcgctatttgtgaatttatgaaacctgtgccggtggaaaaatattttgatgtggggcgccgtcctcaaacaatcgcatggcatgcttctGCTGTAAATcctactgtaaatcagacagtgcagttagattaacaagaatttaagctttcaaccgatataagacacttgtatgtacctaaacgATTAATATCCaacatttttatgattatttatttgaattgcatgAATTCCAATTATTTGAATTGCGTGAATTCCCCTctagtttcaccggaagttgtcccgctagcgggatgcCTAGCCTGAagatcagaggaaggatccgtaCTTGAGCTCCTGTGCGATGGCAGCGATCTGCTCCACCCTGTCCTGATGAGCAGCCAGATCACTCTCAAACGACTCGTGTTTCCGTAGCAACGCCCGCACCTCCGTCAGGGTGGCCGTCTCATAGTCCTTCTGAGATAGAATCAGCTCTTTTCATGGGTGCTGGCTTTCTGGCGGAACTTTTCAGCCAGGTGGTCCAGTCTCTCGAGTCTTCGGATCTCTGTCAGAAGCCACTCCTCGTAGCCTTTCTCTGCCCCCTCCAGCCCCTGCCATGCACTGGCTATGTCCTACAGCCACACGAGACACAAAGACACAGGTCaaaaccagcaaag

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU94761 lncRNA downstream 40814 76474849 ~ 76475437 (-) True G85960
TU94751 lncRNA downstream 53359 76462582 ~ 76462892 (-) True G85951
TU94750 lncRNA downstream 53700 76462027 ~ 76462551 (-) True G85950
TU94736 lncRNA downstream 67482 76444938 ~ 76448769 (-) True LOC110529591
TU94592 lncRNA downstream 188024 76325641 ~ 76328227 (-) False ccser2a
TU94903 lncRNA upstream 38722 76562203 ~ 76575643 (-) True G86094
TU94947 lncRNA upstream 85203 76608684 ~ 76609644 (-) True G86133
TU95340 lncRNA upstream 413160 76936641 ~ 76938757 (-) True G86492
TU95670 lncRNA upstream 498871 77022352 ~ 77022625 (-) True G86783
TU95650 lncRNA upstream 521995 77045476 ~ 77048351 (-) False LOC110529759
XM_036976270.1 mRNA downstream 49041 76465963 ~ 76467210 (-) True LOC118964475
XR_002474419.2 mRNA downstream 64083 76445649 ~ 76452168 (-) False LOC110529591
XM_021611938.2 mRNA downstream 64084 76444408 ~ 76452167 (-) False LOC110529591
XM_021611948.2 mRNA downstream 64085 76444408 ~ 76452166 (-) False LOC110529591
XM_036985557.1 mRNA downstream 116254 76329207 ~ 76399997 (-) False ccser2a
XM_021612160.2 mRNA upstream 339998 76863479 ~ 76871869 (-) True LOC110529704
XM_021612139.2 mRNA upstream 348611 76872092 ~ 76930446 (-) False LOC110529688
XM_021612147.2 mRNA upstream 350339 76873820 ~ 76930446 (-) False LOC110529688
XM_021612130.2 mRNA upstream 353437 76876918 ~ 76930446 (-) True LOC110529688
XM_036989878.1 mRNA upstream 524321 77047802 ~ 77084980 (-) False LOC110529759
TU94594 other downstream 116295 76367293 ~ 76399956 (-) True ccser2a
TU94659 other downstream 182115 76333468 ~ 76334136 (-) True G85866
TU93438 other downstream 987348 75528343 ~ 75528903 (-) True G84713
TU92810 other downstream 1542930 74972212 ~ 74973321 (-) True fank1
TU92060 other downstream 1943462 74572447 ~ 74572789 (-) True G83429
TU94946 other upstream 83201 76606682 ~ 76608354 (-) True G86132
TU95290 other upstream 343423 76866904 ~ 76867598 (-) True G86448
TU96006 other upstream 955122 77478603 ~ 77479939 (-) True G87090
TU98450 other upstream 2526330 79049811 ~ 79050491 (-) True G89418
TU99200 other upstream 3011277 79534758 ~ 79535572 (-) True G90081

Expression Profile


TU94869 Expression in all Baseline Samples

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TU94869 Expression in each Bioproject

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TU94869 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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