RNA id: TU94947



Basic Information


Item Value
RNA id TU94947
length 939
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G86133
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 76608684 ~ 76609644 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACTTTAAAGCTCACATTTAAAATGCACTACATTTTCtccttacactcttagaaaatatatgctatctagaaccttaaagggtacCTCGGCTGAccccacaggagaaccctttttttctacctggaaccaaaacgttccccataggaaaacccttttggATTCCAGGTCGAATCCTCTGTAGAAAAGGTTCTACACGGAACCaaaaagtgttctcttatggggacagccaaaaaaaacctttggaaccctttttttctaagagtgtagttggTGCTGGAAAACCAAAGATGTGTAACCCTCATCTAATTACTAGCTACTATAAACTAAAGACAGAATATGATGTAATGTAGATTGATGCAACACTCATTGGTATGCACTGTCACAGAGGACTGATTGGCTGTCTGTTCCCTGTGAGCTGTTGTACCTTCAAGCAGTAGTAGCCAATGATACAGCAGAAAGAGATGAGGGTGTGAGCGATGGACAGGAAGCGGAGAGAGGGCTCCATGTAACCAGTGCTCTCCTCCAGGACAAACTGCATACTGCCTGAGGTGTTGTCATTGACCAAGGGGCCTTCTTCATCCAGGTCCCCTGAGCTGTCGTATAGCACTGccaccttctcctcttcctcacttACAGAAGATGATGACACCTGGGACACAGTAGCAATGAGACAGTtaaggacagtgagacagtcatTCAATTTCACAGACCAGCCGAAAATGTCCATTTAAATATTTGCACTGGCAGTCACACAGTAACTCACCTTGTAGAAAAGGAGAATGAAGTTGATAGAGAAAGCAACAAACAAAGCCAGCATCCGCATGTTGTAGAAATTCCTCGCAAAGTAATTCTGAGAAATGAGATATGGTCAAATTCAGAGGAGGGAGAAAAtacttgtgtgtgtctgtttgtgtgtgtatctgtgtctgtgtctgtgtg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU94903 lncRNA downstream 33041 76562203 ~ 76575643 (-) True G86094
TU94869 lncRNA downstream 85203 76516251 ~ 76523481 (-) False G86063
TU94761 lncRNA downstream 133247 76474849 ~ 76475437 (-) True G85960
TU94751 lncRNA downstream 145792 76462582 ~ 76462892 (-) True G85951
TU94750 lncRNA downstream 146133 76462027 ~ 76462551 (-) True G85950
TU95340 lncRNA upstream 326997 76936641 ~ 76938757 (-) True G86492
TU95670 lncRNA upstream 412708 77022352 ~ 77022625 (-) True G86783
TU95650 lncRNA upstream 435832 77045476 ~ 77048351 (-) False LOC110529759
TU95648 lncRNA upstream 435848 77045492 ~ 77048351 (-) True LOC110529759
TU95685 lncRNA upstream 456754 77066398 ~ 77066950 (-) True G86798
XM_036976270.1 mRNA downstream 141474 76465963 ~ 76467210 (-) True LOC118964475
XR_002474419.2 mRNA downstream 156516 76445649 ~ 76452168 (-) False LOC110529591
XM_021611938.2 mRNA downstream 156517 76444408 ~ 76452167 (-) False LOC110529591
XM_021611948.2 mRNA downstream 156518 76444408 ~ 76452166 (-) False LOC110529591
XM_036985557.1 mRNA downstream 208687 76329207 ~ 76399997 (-) False ccser2a
XM_021612160.2 mRNA upstream 253835 76863479 ~ 76871869 (-) True LOC110529704
XM_021612139.2 mRNA upstream 262448 76872092 ~ 76930446 (-) False LOC110529688
XM_021612147.2 mRNA upstream 264176 76873820 ~ 76930446 (-) False LOC110529688
XM_021612130.2 mRNA upstream 267274 76876918 ~ 76930446 (-) True LOC110529688
XM_036989878.1 mRNA upstream 438158 77047802 ~ 77084980 (-) False LOC110529759
TU94946 other downstream 330 76606682 ~ 76608354 (-) True G86132
TU94870 other downstream 85203 76521085 ~ 76523481 (-) True G86063
TU94594 other downstream 208728 76367293 ~ 76399956 (-) True ccser2a
TU94659 other downstream 274548 76333468 ~ 76334136 (-) True G85866
TU93438 other downstream 1079781 75528343 ~ 75528903 (-) True G84713
TU95290 other upstream 257260 76866904 ~ 76867598 (-) True G86448
TU96006 other upstream 868959 77478603 ~ 77479939 (-) True G87090
TU98450 other upstream 2440167 79049811 ~ 79050491 (-) True G89418
TU99200 other upstream 2925114 79534758 ~ 79535572 (-) True G90081
TU99325 other upstream 3273893 79883537 ~ 79897840 (-) True LOC110530200

Expression Profile