RNA id: TU95340


Basic Information

Item Value
RNA id TU95340
length 1850
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G86492
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 76936641 ~ 76938757 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGGTGGAGTCATAATTGGTCTGTTTTTTGTATGGGTCATCTCAGAAATAACTCAATAATAAGTTATATAACATTGGGAACGTCAAACAAAAGGAAAATAATGACTTCATAGCATAAAAGCAGTTAATTTGGGGATAGAAAGTGCTTCCCATATACAACACTTCTTCTTGAACCAGTGTGGATGAGGGGTGGCAACAGTACTGTTTTCAGAAGTGTCCATGAAGTTAATTTGCTTAAACCTCTTCCGTTGTCTCAAACTTCAGTCCTTTACATTGCATACTTTTGAGTCCAATCTCTTGCTAATCTGTTGTACTTTCTTTGTCCTGCTTGTAGATGTGTGCTATGTCTGGGACTAGGGGGTCATCTGGGTTTGGGTCACATAGCAAAGAGCATATGGACAATAAAACTGGAAGAACAAAAAGGCAGGGATAACCAGGATGAGTTTATTTCGCAATTACACCAGCAATAATAGTCATTATCAATATTGTCAAGCTTAACAGTTGGAGAACAAATCAGGCATTTTTCAACTAACTTTCATGAGGGTACAAAAGACACACAGAAAAACAAGTTGGTTTACAAACCACACATGTAAGCCAGTTTGTCTTACCTTTTGAAACTGTAAGTGCTGGGGACCACTGTGACCTCAGGATGTCCAGACAGATGCTACCATTACTGTTTATGTTTGGGTGATAGATTTTTGTTGTGAAGGCTACCTATGGAAAGAAAATACATGGAGAAAAAGAAAGTCAGGCATACATACTGCATGTGGTTTAGGGTACTCGACACCTAGGGGAATATTGTGTAACAGGAGCTGAAGAGGTGTTTCTAACCTTTGGTGGTTTGAAGGGATAGTCTGTTGGGAAGTGGATGGTGAGGAAGAACACTCCTCCCTGATATGGGCTGTCAGTCTAAAAGAGGGGTGAAAGGTTCCTTGTTAAAACAGTGCTGTGAACCGTAAAGTGACACCCAATACTCCATAGAATGTTAAAGCCCACAGTCAGCCTCCCTTTACTTGTCATTGTTTACAGTAACAGAAGTGTGATGGGGGTTTACTGGAGGTGACACACATCCAAGCAACTCTGTTATAGTAGGCTATATAGTAAGACAAGGAGACTAACACGTGTTCCTTTGGTGCAAGAAGGTTGAGCTTATAACAATGGGACCAAAGCAGAATAAATAGCTTCCATCAGAAATCAACACAATATTGACACACCGTTGTCTACTAAAGATTTAGAAACAATGAGAATTTAGAAAAGGGCTTACAGGTCCCATGATTGTGGCTTGCCAATGAAACACTGTAAAAGAAAGAAGAGACATTAGATCACATCAAATCATATAATTATAGAcaataataaaatacaaaatggcACCAAAAGGAATTAATCGACTGAGGTCAATACCCCTTCATTTCCATATGCATCAAATTGTATTTCTGCATTAATTAAGGTGGCCACAAAAGCTGTAGTGAAACATACAGTCCTCTCCAACTGGTCCAGCTGAGCATTGAGCAGGAGGGTCCCTTTGCAAGTCATGTAGCTCCtgtaaaataaaattaaatgtAGCACAATGAATTATGCACAGGGGGAAAATGCCATACATATAGTGCATTGTCTACCCAACAATGTTAGCTGCTTTGACAAGTCAGTCTTGTGGTCTATATGGCTTTATACGAATTCAAGTAGCTAGCTAGGTGACATGTTGTGCTGTATGTTTTACATGGTGTAATGTTTATTGACAGCTGCTGCTTTCTTGGCCAGATCTCCCTTGCAAAAGAGACGCCGTGTCTCAATGTttttttcctggttaaataagtAAACAACaaggtacctagctagctacatatatAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94947 lncRNA downstream 326997 76608684 ~ 76609644 (-) True G86133
TU94903 lncRNA downstream 360998 76562203 ~ 76575643 (-) True G86094
TU94869 lncRNA downstream 413160 76516251 ~ 76523481 (-) False G86063
TU94761 lncRNA downstream 461204 76474849 ~ 76475437 (-) True G85960
TU94751 lncRNA downstream 473749 76462582 ~ 76462892 (-) True G85951
TU95670 lncRNA upstream 83595 77022352 ~ 77022625 (-) True G86783
TU95650 lncRNA upstream 106719 77045476 ~ 77048351 (-) False LOC110529759
TU95648 lncRNA upstream 106735 77045492 ~ 77048351 (-) True LOC110529759
TU95685 lncRNA upstream 127641 77066398 ~ 77066950 (-) True G86798
TU95689 lncRNA upstream 133489 77072246 ~ 77072449 (-) True G86802
XM_021612139.2 mRNA downstream 6195 76872092 ~ 76930446 (-) False LOC110529688
XM_021612147.2 mRNA downstream 6195 76873820 ~ 76930446 (-) False LOC110529688
XM_021612130.2 mRNA downstream 6195 76876918 ~ 76930446 (-) True LOC110529688
XM_021612160.2 mRNA downstream 64772 76863479 ~ 76871869 (-) True LOC110529704
XM_036976270.1 mRNA downstream 469431 76465963 ~ 76467210 (-) True LOC118964475
XM_036989878.1 mRNA upstream 109045 77047802 ~ 77084980 (-) False LOC110529759
XM_021612324.2 mRNA upstream 146117 77084874 ~ 77103340 (-) True LOC110529788
XM_021612370.2 mRNA upstream 165609 77104366 ~ 77118910 (-) False LOC110529797
XM_021612337.2 mRNA upstream 165609 77104366 ~ 77118911 (-) False LOC110529797
XM_021612355.2 mRNA upstream 165609 77104366 ~ 77118911 (-) False LOC110529797
TU95290 other downstream 69043 76866904 ~ 76867598 (-) True G86448
TU94946 other downstream 328287 76606682 ~ 76608354 (-) True G86132
TU94870 other downstream 413160 76521085 ~ 76523481 (-) True G86063
TU94594 other downstream 536685 76367293 ~ 76399956 (-) True ccser2a
TU94659 other downstream 602505 76333468 ~ 76334136 (-) True G85866
TU96006 other upstream 539846 77478603 ~ 77479939 (-) True G87090
TU98450 other upstream 2111054 79049811 ~ 79050491 (-) True G89418
TU99200 other upstream 2596001 79534758 ~ 79535572 (-) True G90081
TU99325 other upstream 2944780 79883537 ~ 79897840 (-) True LOC110530200
TU99326 other upstream 2947918 79886675 ~ 79888180 (-) True G90190

Expression Profile