RNA id: TU96001


Basic Information

Item Value
RNA id TU96001
length 1813
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id G87085
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 77471489 ~ 77473367 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACAAAAACTACAGAACATATGGTTGTTCTCCCTATGTACACAGGAAATCAATCATTTTCACATCTGAAAACAACAGTTTGAGGAATTTGTTCTTTAATCTTCATGTCACACATCGAACCATCAAGTTTAAACAAAAGTAGTATAATTGTTCACAGTATTGGATTTTGCAGTGTTAGACTACAGTGTTTCAAGTGAAGGcacaaaacaaaataatattCTTGCAAATAAACCCACCTACCTACAAACATAAACCAGGGAGACTAGACTTGAAATATAACAGTAGCACATAATTAAACTAACTTTATCTCTGGTCATACTCAATACCtgaatcctcctctctctttctgattgTCTAGTGCTAGCAACAATCTCCTTAGGAGACCAATAAGCCCCAAAGTGCTCTTTACTCAATTGGGCAACTCTGTTGCCATTAAAATACATCTCGTTCTGCTACAAAagataaacataaatatataaagaCAAAATATAAGGAGCATGCTCTCACAATAGACAATAGCTATGCGCCTAATGCAAATTACTATAAAAaaaagaacgtctgctaaatgatggaaatgtagccaaattgtatctatgatccTATGCTATCCATTCATGATTTTGGTATCTTTATATCTGAGAATTAACCAttgatatcaggccacacccggccatgattatAGACACCTGTGTGTCCTctgacactatataaactagtcaccccacagtgtttgtcattacaccctgatgaagacagcttgtctgtacAAACGTTGGTTATTAGGTTATTAATGCATCCGAGTTCCTAGAGTGTCCTTTCattttcaagtgttctactctgctagccagcatctcgcctaaataggtgtgcgtttctttcgccTCTAAATGACGTAAATATAACTATAAAGCTATGTCAATTCAGGAGTTCCATTTTGAAAATAAAACTTTTTTTCAGAATTTAGACTTCAACCGTGGTCTATACAGCAGCACCATGTAAATAACACTAACTATAAAAAGATTGGCTATATTCATGCATTTGCTACATTGCCTTCATTTCCCCATAAAACTACATTTCCCTTTGAGACATCCAGTACCAAAATCATGAATGGATAACAAAACATACAGTTACAACAAATACCAAAAGAGACGTTTTATTTGGATTTCTTTCTAATATATTCTCATGGCTTGATGGAGTACAATGACTTGTAAACATAGATACTACATCACAGCCAATTAGGATGCATGATTTCATAAAACAGGATTTCATTCAAATGTACCCTAAcattttacttgacacccagtgtcataacacgatcataaccatgtcataacacgATCATAACCATGTAATAACAcgatcataaccatgtcataacacgatcataaccatgtcataaccatgtcataaccatgtcataacacgatcataaccatgtcataacacgatcataaccatgtcataacactgtcatgacatatttagacctgttgtaacatacagtgcattcggaaagtattcagacccctcgacttttcccCAAAAAGTTTACGTTACATATATAAGGTCATGTACATGATTGGCCTATCTgtctgatggtcataatgctttttgacagtgtcataaagtgtgttttcttagtccaagtaaagtgacacaggatgctCATAATGCTTCATGAAATTGTCAAAGTGTATTTGATGAAAAAACATGACTGTAAAGAATTTATAACAACAAAGGATTTCCGAAACAAACTTTCAAACtaaaggaaacttcttggcaggTTAAAACTAATTTGAATAACgctatatgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95994 lncRNA downstream 10190 77461045 ~ 77461299 (-) True G87081
TU95990 lncRNA downstream 20185 77447067 ~ 77451304 (-) True G87077
TU95987 lncRNA downstream 24864 77438836 ~ 77446625 (-) True G87074
TU95928 lncRNA downstream 116287 77354910 ~ 77355202 (-) True G87018
TU95927 lncRNA downstream 117736 77353421 ~ 77353753 (-) True G87017
TU96009 lncRNA upstream 9144 77482511 ~ 77483926 (-) True G87093
TU96016 lncRNA upstream 19769 77493136 ~ 77493369 (-) True G87100
TU96027 lncRNA upstream 39950 77513317 ~ 77513986 (-) True G87111
TU96029 lncRNA upstream 44078 77517445 ~ 77517657 (-) True G87113
TU96049 lncRNA upstream 63642 77537009 ~ 77537875 (-) True LOC110529957
XM_021612577.2 mRNA downstream 10829 77453710 ~ 77460660 (-) True rtkn2a
XM_021612553.2 mRNA downstream 114708 77352007 ~ 77356781 (-) True tmem26a
XM_036985839.1 mRNA downstream 157689 77148371 ~ 77313800 (-) True LOC110529831
XM_036985833.1 mRNA downstream 173852 77148371 ~ 77297637 (-) False LOC110529831
XM_036985955.1 mRNA downstream 193573 77148371 ~ 77277916 (-) False LOC110529831
XM_021612603.2 mRNA upstream 11252 77484619 ~ 77487187 (-) True LOC110529928
XM_021612639.2 mRNA upstream 53064 77526431 ~ 77535457 (-) True LOC110529949
XM_021612649.2 mRNA upstream 62152 77535519 ~ 77542730 (-) False LOC110529957
XM_036986057.1 mRNA upstream 62152 77535519 ~ 77542730 (-) False LOC110529957
XM_021612662.2 mRNA upstream 133552 77606919 ~ 77623628 (-) True tbc1d12a
TU95290 other downstream 603891 76866904 ~ 76867598 (-) True G86448
TU94946 other downstream 863135 76606682 ~ 76608354 (-) True G86132
TU94870 other downstream 948008 76521085 ~ 76523481 (-) True G86063
TU94594 other downstream 1071533 76367293 ~ 76399956 (-) True ccser2a
TU94659 other downstream 1137353 76333468 ~ 76334136 (-) True G85866
TU96006 other upstream 5236 77478603 ~ 77479939 (-) True G87090
TU98450 other upstream 1576444 79049811 ~ 79050491 (-) True G89418
TU99200 other upstream 2061391 79534758 ~ 79535572 (-) True G90081
TU99325 other upstream 2410170 79883537 ~ 79897840 (-) True LOC110530200
TU99326 other upstream 2413308 79886675 ~ 79888180 (-) True G90190

Expression Profile