RNA id: TU96321


Basic Information

Item Value
RNA id TU96321
length 367
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G87389
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 77684947 ~ 77685313 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTacagggtaatgtaaaagttgtattttttaaggatccaatgtgtaatattgtacacttatcataattaggttttagtccagagagtacagaaatGTTATCTAGATCTTTAATGAGACATTGCGGGGATCTAGCTTGTGGACTTaacataaaacttgagtcatcggcatacatggacacctttgtttttaagccttggatttctaatcctctaatgttgttattggatctgattttaatagctagcatttcgatggccataatgaatagatatggtgacagcggacacccttgtttaactcttgacaattcaaaactctctgagaagtagccgttatttactattttacacctggggttgctatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96297 lncRNA downstream 34734 77649962 ~ 77650213 (-) True G87365
TU96295 lncRNA downstream 37062 77645921 ~ 77647885 (-) True G87363
TU96252 lncRNA downstream 114937 77569329 ~ 77570010 (-) True G87322
TU96058 lncRNA downstream 139314 77545401 ~ 77545633 (-) True G87141
TU96057 lncRNA downstream 139565 77545180 ~ 77545382 (-) True G87140
TU96358 lncRNA upstream 60114 77745427 ~ 77745798 (-) True G87425
TU96308 lncRNA upstream 75808 77761121 ~ 77763616 (-) True G87376
TU96787 lncRNA upstream 180763 77866076 ~ 77866309 (-) True G87832
TU96796 lncRNA upstream 195160 77880473 ~ 77880722 (-) True G87841
TU96820 lncRNA upstream 225624 77910937 ~ 77911147 (-) True G87865
XM_021612662.2 mRNA downstream 61319 77606919 ~ 77623628 (-) True tbc1d12a
XM_021612649.2 mRNA downstream 142217 77535519 ~ 77542730 (-) False LOC110529957
XM_036986057.1 mRNA downstream 142217 77535519 ~ 77542730 (-) False LOC110529957
XM_021612639.2 mRNA downstream 149490 77526431 ~ 77535457 (-) True LOC110529949
XM_021612603.2 mRNA downstream 197760 77484619 ~ 77487187 (-) True LOC110529928
XM_021612720.2 mRNA upstream 10594 77695907 ~ 77735548 (-) True LOC110529991
XM_036989897.1 mRNA upstream 80631 77765944 ~ 77782971 (-) True sh2d4ba
XM_036986107.1 mRNA upstream 239223 77924536 ~ 78308976 (-) False LOC110529998
XM_036986111.1 mRNA upstream 239223 77924536 ~ 78308978 (-) True LOC110529998
XM_036986138.1 mRNA upstream 950971 78636284 ~ 78959395 (-) False LOC110532724
TU96006 other downstream 205008 77478603 ~ 77479939 (-) True G87090
TU95290 other downstream 817349 76866904 ~ 76867598 (-) True G86448
TU94946 other downstream 1076593 76606682 ~ 76608354 (-) True G86132
TU94870 other downstream 1161466 76521085 ~ 76523481 (-) True G86063
TU94594 other downstream 1284991 76367293 ~ 76399956 (-) True ccser2a
TU98450 other upstream 1364498 79049811 ~ 79050491 (-) True G89418
TU99200 other upstream 1849445 79534758 ~ 79535572 (-) True G90081
TU99325 other upstream 2198224 79883537 ~ 79897840 (-) True LOC110530200
TU99326 other upstream 2201362 79886675 ~ 79888180 (-) True G90190
TU99544 other upstream 2456246 80141559 ~ 80142157 (-) True G90382

Expression Profile