RNA id: TU97247


Basic Information

Item Value
RNA id TU97247
length 276
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G88279
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 78392156 ~ 78392431 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccaaagaaatgccaccccacaccatgactgacccaccgccaaaccggtcatgctggaggatgttgcaggcagcagaacgttctccacggcgtctccagactctgccatgtctgtcacatgtgctcagtgtgaacctgctttcatctgtgaagggcacagggcgccagtggcgaatttgccaatcttggtgttctctggcaaatgccaaacgtcctgcacggtgttgggctgtaagcacaacccccacctgtggacgtcgggccctcataccaccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97242 lncRNA downstream 2367 78389582 ~ 78389789 (-) True G88274
TU97177 lncRNA downstream 41976 78349968 ~ 78350180 (-) True G88212
TU97169 lncRNA downstream 46599 78345213 ~ 78345557 (-) True G88204
TU97163 lncRNA downstream 52805 78338959 ~ 78339351 (-) True G88198
TU96863 lncRNA downstream 419767 77971404 ~ 77972389 (-) True G87908
TU97266 lncRNA upstream 15152 78407583 ~ 78407808 (-) True G88297
TU97411 lncRNA upstream 116474 78508905 ~ 78509112 (-) True G88437
TU97422 lncRNA upstream 125888 78518319 ~ 78518636 (-) True G88448
TU97439 lncRNA upstream 137897 78530328 ~ 78530628 (-) True G88465
TU97440 lncRNA upstream 138580 78531011 ~ 78531233 (-) True G88466
XM_036986111.1 mRNA downstream 83178 77924536 ~ 78308978 (-) True LOC110529998
XM_036986107.1 mRNA downstream 83180 77924536 ~ 78308976 (-) False LOC110529998
XM_036989897.1 mRNA downstream 609185 77765944 ~ 77782971 (-) True sh2d4ba
XM_021612720.2 mRNA downstream 656608 77695907 ~ 77735548 (-) True LOC110529991
XM_021612662.2 mRNA downstream 768528 77606919 ~ 77623628 (-) True tbc1d12a
XM_036986138.1 mRNA upstream 243853 78636284 ~ 78959395 (-) False LOC110532724
XM_036986147.1 mRNA upstream 243853 78636284 ~ 78959395 (-) False LOC110532724
XM_021612803.2 mRNA upstream 688323 79080754 ~ 79092871 (-) False LOC110530032
XM_021612809.2 mRNA upstream 688323 79080754 ~ 79092872 (-) False LOC110530032
XM_021612818.2 mRNA upstream 688323 79080754 ~ 79092872 (-) False LOC110530032
TU96006 other downstream 912217 77478603 ~ 77479939 (-) True G87090
TU95290 other downstream 1524558 76866904 ~ 76867598 (-) True G86448
TU94946 other downstream 1783802 76606682 ~ 76608354 (-) True G86132
TU94870 other downstream 1868675 76521085 ~ 76523481 (-) True G86063
TU94594 other downstream 1992200 76367293 ~ 76399956 (-) True ccser2a
TU98450 other upstream 657380 79049811 ~ 79050491 (-) True G89418
TU99200 other upstream 1142327 79534758 ~ 79535572 (-) True G90081
TU99325 other upstream 1491106 79883537 ~ 79897840 (-) True LOC110530200
TU99326 other upstream 1494244 79886675 ~ 79888180 (-) True G90190
TU99544 other upstream 1749128 80141559 ~ 80142157 (-) True G90382

Expression Profile