RNA id: TU98573


Basic Information

Item Value
RNA id TU98573
length 299
lncRNA type intronic
GC content 0.64
exon number 1
gene id G89527
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 79270046 ~ 79270344 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggagcatgcccaggcgttgtagggaggtcatacaggcacgtggaggccacacacactactgagcctcattttgacttgttttaaggacattacatcaaagttagatcagcctgtagtgtggttttccactttaattttgagtgtgactccaaatccagacctccatgggttgataaatttgatttccattgatcatttttgtgtgattttgttgtcagcacattcaactatttcattcattcagatctaggatgtgttattttagtgttccctttatattTTGAGGAGTGTATAAtac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98572 lncRNA downstream 5216 79264211 ~ 79264830 (-) True G89526
TU98571 lncRNA downstream 5855 79263974 ~ 79264191 (-) True G89525
TU98569 lncRNA downstream 24566 79245195 ~ 79245480 (-) True G89523
TU98556 lncRNA downstream 42854 79226984 ~ 79227192 (-) True G89510
TU98555 lncRNA downstream 43138 79226701 ~ 79226908 (-) True G89509
TU98574 lncRNA upstream 44 79270388 ~ 79270623 (-) True G89528
TU98577 lncRNA upstream 6487 79276831 ~ 79277054 (-) True G89531
TU98578 lncRNA upstream 6899 79277243 ~ 79277588 (-) True G89532
TU98586 lncRNA upstream 32275 79302619 ~ 79302892 (-) True G89540
TU98590 lncRNA upstream 43076 79313420 ~ 79313833 (-) True G89544
XM_021612927.2 mRNA downstream 57478 79209864 ~ 79212568 (-) True LOC110530107
XM_021612916.2 mRNA downstream 60847 79207502 ~ 79209199 (-) False LOC110530099
XM_036986226.1 mRNA downstream 61239 79207597 ~ 79208807 (-) True LOC110530099
XM_021612876.2 mRNA downstream 160709 79093139 ~ 79109337 (-) True LOC110530078
XM_036986192.1 mRNA downstream 160737 79093139 ~ 79109309 (-) False LOC110530078
XR_005052954.1 mRNA upstream 2888 79273232 ~ 79351404 (-) False LOC110530112
XR_005052955.1 mRNA upstream 2888 79273232 ~ 79351404 (-) True LOC110530112
XM_021612985.2 mRNA upstream 91253 79361597 ~ 79448242 (-) False LOC110530138
XM_021612995.2 mRNA upstream 91253 79361597 ~ 79495170 (-) True LOC110530138
XM_036986287.1 mRNA upstream 342293 79612637 ~ 79691783 (-) False LOC100136270
TU98450 other downstream 219555 79049811 ~ 79050491 (-) True G89418
TU96006 other downstream 1790107 77478603 ~ 77479939 (-) True G87090
TU95290 other downstream 2402448 76866904 ~ 76867598 (-) True G86448
TU94946 other downstream 2661692 76606682 ~ 76608354 (-) True G86132
TU94870 other downstream 2746565 76521085 ~ 76523481 (-) True G86063
TU99200 other upstream 264414 79534758 ~ 79535572 (-) True G90081
TU99325 other upstream 613193 79883537 ~ 79897840 (-) True LOC110530200
TU99326 other upstream 616331 79886675 ~ 79888180 (-) True G90190
TU99544 other upstream 871215 80141559 ~ 80142157 (-) True G90382
TU101177 other upstream 1670380 80940724 ~ 80941674 (-) True nphp1

Expression Profile