RNA id: TU98606


Basic Information

Item Value
RNA id TU98606
length 315
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G89560
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 79352774 ~ 79353088 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taataattgagtgtatttaaacttctgacccactgggaatgtgatgaaagaaatcaaagctgaaagaaataattttctctactgacatttcacattctcaaaataaagtggtgatcctaactgtcctaaaacatggattttttactaggattaaatgtcaggaattgtgaaaaactgagtttaaatgtctttggctaaggtgtatgtaaacatccgacttcaactgtaccttggTTAAATGCACAGGAATGTATTTGAGTCAgagtgtaggcctccttgccgaGTATTTTAGTATTTCCATATACATTCCAATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98593 lncRNA downstream 33408 79318961 ~ 79319366 (-) True G89547
TU98590 lncRNA downstream 38941 79313420 ~ 79313833 (-) True G89544
TU98586 lncRNA downstream 49882 79302619 ~ 79302892 (-) True G89540
TU98578 lncRNA downstream 75186 79277243 ~ 79277588 (-) True G89532
TU98577 lncRNA downstream 75720 79276831 ~ 79277054 (-) True G89531
TU98682 lncRNA upstream 149373 79502461 ~ 79502674 (-) True G89636
TU99180 lncRNA upstream 153628 79506716 ~ 79506944 (-) True G90063
TU99187 lncRNA upstream 165995 79519083 ~ 79519485 (-) True G90070
TU99192 lncRNA upstream 174486 79527574 ~ 79527832 (-) True G90074
TU99194 lncRNA upstream 176135 79529223 ~ 79529514 (-) True G90076
XR_005052954.1 mRNA downstream 1370 79273232 ~ 79351404 (-) False LOC110530112
XR_005052955.1 mRNA downstream 1370 79273232 ~ 79351404 (-) True LOC110530112
XM_021612948.2 mRNA downstream 1372 79257290 ~ 79351402 (-) False LOC110530112
XM_021612956.2 mRNA downstream 1373 79257290 ~ 79351401 (-) False LOC110530112
XM_021612963.2 mRNA downstream 1373 79257290 ~ 79351401 (-) False LOC110530112
XM_021612985.2 mRNA upstream 8509 79361597 ~ 79448242 (-) False LOC110530138
XM_021612995.2 mRNA upstream 8509 79361597 ~ 79495170 (-) True LOC110530138
XM_036986287.1 mRNA upstream 259549 79612637 ~ 79691783 (-) False LOC100136270
XM_021613015.2 mRNA upstream 259549 79612637 ~ 79692579 (-) True LOC100136270
XR_005052966.1 mRNA upstream 508993 79862081 ~ 79870881 (-) False LOC110530200
TU98450 other downstream 302283 79049811 ~ 79050491 (-) True G89418
TU96006 other downstream 1872835 77478603 ~ 77479939 (-) True G87090
TU95290 other downstream 2485176 76866904 ~ 76867598 (-) True G86448
TU94946 other downstream 2744420 76606682 ~ 76608354 (-) True G86132
TU94870 other downstream 2829293 76521085 ~ 76523481 (-) True G86063
TU99200 other upstream 181670 79534758 ~ 79535572 (-) True G90081
TU99325 other upstream 530449 79883537 ~ 79897840 (-) True LOC110530200
TU99326 other upstream 533587 79886675 ~ 79888180 (-) True G90190
TU99544 other upstream 788471 80141559 ~ 80142157 (-) True G90382
TU101177 other upstream 1587636 80940724 ~ 80941674 (-) True nphp1

Expression Profile