RNA id: TU99187


Basic Information

Item Value
RNA id TU99187
length 403
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G90070
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 79519083 ~ 79519485 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAGGTGAATGAAGCAATATaaggagagatccttgatgaaaacctgctccagagcactcaggacctcatactgcggcgacggttcaccttccaacaggacaacgaccctaagcacacagccaagacaacgcaggtgtggcttcgggacaagtctctgaatgtccttgagtggccaagccagagcccggacttgaacccgatcgaacatctctggaaagacacgaaaatagctgtgcagcaacgctccccatacaacctgacagaacgtgagaggttctgcagagaagactgagagaaactccccaaatacaggtgtgccaagcgtcatacccaagaagactcaaggctgtaatcgctgccaaaggtgcttcagcaaagtactgagtaaagggtctgaatactt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99180 lncRNA downstream 12139 79506716 ~ 79506944 (-) True G90063
TU98682 lncRNA downstream 16409 79502461 ~ 79502674 (-) True G89636
TU98606 lncRNA downstream 165995 79352774 ~ 79353088 (-) True G89560
TU98593 lncRNA downstream 199717 79318961 ~ 79319366 (-) True G89547
TU98590 lncRNA downstream 205250 79313420 ~ 79313833 (-) True G89544
TU99192 lncRNA upstream 8089 79527574 ~ 79527832 (-) True G90074
TU99194 lncRNA upstream 9738 79529223 ~ 79529514 (-) True G90076
TU99195 lncRNA upstream 12201 79531686 ~ 79531894 (-) True G90077
TU99198 lncRNA upstream 14734 79534219 ~ 79534474 (-) True G90080
TU99213 lncRNA upstream 31351 79550836 ~ 79551279 (-) True G90089
XM_021612995.2 mRNA downstream 23913 79361597 ~ 79495170 (-) True LOC110530138
XM_021612985.2 mRNA downstream 70841 79361597 ~ 79448242 (-) False LOC110530138
XR_005052954.1 mRNA downstream 167679 79273232 ~ 79351404 (-) False LOC110530112
XR_005052955.1 mRNA downstream 167679 79273232 ~ 79351404 (-) True LOC110530112
XM_021612948.2 mRNA downstream 167681 79257290 ~ 79351402 (-) False LOC110530112
XM_036986287.1 mRNA upstream 93152 79612637 ~ 79691783 (-) False LOC100136270
XM_021613015.2 mRNA upstream 93152 79612637 ~ 79692579 (-) True LOC100136270
XR_005052966.1 mRNA upstream 342596 79862081 ~ 79870881 (-) False LOC110530200
XR_005052965.1 mRNA upstream 342596 79862081 ~ 79870883 (-) False LOC110530200
XR_005052963.1 mRNA upstream 342596 79862081 ~ 79880384 (-) False LOC110530200
TU98450 other downstream 468592 79049811 ~ 79050491 (-) True G89418
TU96006 other downstream 2039144 77478603 ~ 77479939 (-) True G87090
TU95290 other downstream 2651485 76866904 ~ 76867598 (-) True G86448
TU94946 other downstream 2910729 76606682 ~ 76608354 (-) True G86132
TU94870 other downstream 2995602 76521085 ~ 76523481 (-) True G86063
TU99200 other upstream 15273 79534758 ~ 79535572 (-) True G90081
TU99325 other upstream 364052 79883537 ~ 79897840 (-) True LOC110530200
TU99326 other upstream 367190 79886675 ~ 79888180 (-) True G90190
TU99544 other upstream 622074 80141559 ~ 80142157 (-) True G90382
TU101177 other upstream 1421239 80940724 ~ 80941674 (-) True nphp1

Expression Profile