RNA id: TU99326


Basic Information

Item Value
RNA id TU99326
length 1134
RNA type TUCP
GC content 0.52
exon number 3
gene id G90190
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 79886675 ~ 79888180 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcacgcacacacacagtcagacacacacacacacacacagtcagacacacacacacacacacacagtcagacacacacacacacacacagctagtcacgcacacacacacacacagtcagtcacacacacacacacagtcagtcagtcacacacagtcagtcagtcagatacacgaacgcacgcacacaatcagtcagtcagacacgcacacaacacacacacccagtcagtccgacatgtgcacacacacccagtcagtcagacaaacacacacacacagtcaggcagatacacgcacacacacagtcagtcaaacacagacacacagtcagtcagtcgcacacagacagacacacagtcagtcagtcacacacagacagacacacagtcagtcagtcagtcacacacagacagacacacagtcagtcaatcgcacacagacagtcagtcagatacacgcgcacacagtcagacagacactcacagtCAGGTAGATACTCACAGGCAGAcggacaaacagacaggcagacacacacagtcagtcgcacgcacacacacacacacacacacactcagacacacagtcagtcacacacacagtcagtcacacacatgcacacagtcaGTCatgcacacacagtcagacacgcacacacacactcagtcagacgcacgcacacacacacacacacacactctctcagtcagtcagtcagtcagacacgcacacacacattcagtcagtcagacacgcacgcacacacacatacacccagtcagtcagacacgcacacacccagTCAGGcagatacacgcacacacacacacacacacacacacacacacacacacacacacacccccagtcAGGcagatacacgcacacacacagtcagtcagacacaatcagacacacacagacacacagtcagtcagtagcacacagtcagtcagatacACGAACGCAAACACAGTcagtcacacgcacgcacacacacagtcagacacacacacacacacacacacagtcagacacacacacagtcagacacatacacaatcagacacgcacacacacagtcagtcatgcacacacacacacacacacagtcagtcatgcacaaacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99311 lncRNA downstream 18900 79863436 ~ 79867775 (-) False LOC110530200
TU99342 lncRNA downstream 147993 79677856 ~ 79738682 (-) True G90205
TU99268 lncRNA downstream 281395 79605007 ~ 79605280 (-) True G90137
TU99263 lncRNA downstream 288202 79598110 ~ 79598473 (-) True G90132
TU99248 lncRNA downstream 306104 79580371 ~ 79580571 (-) True G90117
TU99403 lncRNA upstream 38035 79926215 ~ 79928905 (-) True G90260
TU99445 lncRNA upstream 73010 79961190 ~ 79989614 (-) True G90291
TU99420 lncRNA upstream 265651 80153831 ~ 80157631 (-) True G90271
TU99569 lncRNA upstream 296961 80185141 ~ 80185438 (-) True G90406
TU99572 lncRNA upstream 298296 80186476 ~ 80186781 (-) True G90409
XR_005052963.1 mRNA downstream 6291 79862081 ~ 79880384 (-) False LOC110530200
XR_005052965.1 mRNA downstream 15792 79862081 ~ 79870883 (-) False LOC110530200
XR_005052966.1 mRNA downstream 15794 79862081 ~ 79870881 (-) False LOC110530200
XM_021613015.2 mRNA downstream 194096 79612637 ~ 79692579 (-) True LOC100136270
XM_036986287.1 mRNA downstream 194892 79612637 ~ 79691783 (-) False LOC100136270
XR_002474496.2 mRNA upstream 18515 79906695 ~ 79917875 (-) False LOC110530200
XR_002474495.2 mRNA upstream 18518 79906698 ~ 79917875 (-) False LOC110530200
XM_021613088.2 mRNA upstream 21185 79909365 ~ 79917875 (-) False LOC110530200
XM_021613097.2 mRNA upstream 21185 79909365 ~ 79917875 (-) False LOC110530200
XM_021613137.2 mRNA upstream 47642 79935822 ~ 79939636 (-) False mtrf1l
TU99200 other downstream 351103 79534758 ~ 79535572 (-) True G90081
TU98450 other downstream 836184 79049811 ~ 79050491 (-) True G89418
TU96006 other downstream 2406736 77478603 ~ 77479939 (-) True G87090
TU95290 other downstream 3019077 76866904 ~ 76867598 (-) True G86448
TU94946 other downstream 3278321 76606682 ~ 76608354 (-) True G86132
TU99544 other upstream 253379 80141559 ~ 80142157 (-) True G90382
TU101177 other upstream 1052544 80940724 ~ 80941674 (-) True nphp1
TU101249 other upstream 1139728 81027908 ~ 81028612 (-) True G91941
TU101251 other upstream 1142652 81030832 ~ 81031358 (-) True G91943
TU101255 other upstream 1147395 81035575 ~ 81036138 (-) True G91947

Expression Profile