RNA id: TU99572


Basic Information

Item Value
RNA id TU99572
length 306
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G90409
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 80186476 ~ 80186781 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTaggaaatgtttggaccaagtttacaggtaactttagataatttgtagtcatgttgggcgagttggaaccggtgtttttctgaatcaaacgcgccaaataaatttacATTTTGGGGATATTAAAAGTgagtttatcgaacaaaaggaacatttgtgatgtttctgggacatattggagtgccaacagaagaagatcttcaaaggtaaggcatgaattatatcgttattttgGACTTTCATGTCGCacctccctggttgaaaaatgtttgtCATGCATTTGTATGCGGGGTGCTGtcttcagat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99569 lncRNA downstream 1038 80185141 ~ 80185438 (-) True G90406
TU99420 lncRNA downstream 28845 80153831 ~ 80157631 (-) True G90271
TU99445 lncRNA downstream 196862 79961190 ~ 79989614 (-) True G90291
TU99403 lncRNA downstream 257571 79926215 ~ 79928905 (-) True G90260
TU99311 lncRNA downstream 318701 79863436 ~ 79867775 (-) False LOC110530200
TU99596 lncRNA upstream 17511 80204292 ~ 80204504 (-) True G90429
TU99606 lncRNA upstream 24228 80211009 ~ 80211228 (-) True G90439
TU99610 lncRNA upstream 28018 80214799 ~ 80215568 (-) True G90443
TU99945 lncRNA upstream 50003 80236784 ~ 80237768 (-) False G90744
TU99946 lncRNA upstream 50003 80236784 ~ 80237768 (-) True G90744
XM_036986443.1 mRNA downstream 48024 80072570 ~ 80138452 (-) False LOC110530258
XM_036986453.1 mRNA downstream 48024 80072570 ~ 80138452 (-) True LOC110530258
XR_005052967.1 mRNA downstream 128124 80036440 ~ 80058352 (-) False LOC110530250
XM_036986459.1 mRNA upstream 34235 80221016 ~ 80236430 (-) True LOC110530266
XM_021613272.2 mRNA upstream 79859 80266640 ~ 80349843 (-) False LOC110530293
XM_021613282.2 mRNA upstream 79859 80266640 ~ 80349843 (-) False LOC110530293
XM_021613291.2 mRNA upstream 79859 80266640 ~ 80349843 (-) False LOC110530293
XM_021613297.2 mRNA upstream 79859 80266640 ~ 80349843 (-) False LOC110530293
TU99544 other downstream 44319 80141559 ~ 80142157 (-) True G90382
TU99325 other downstream 288636 79883537 ~ 79897840 (-) True LOC110530200
TU99326 other downstream 298296 79886675 ~ 79888180 (-) True G90190
TU99200 other downstream 650904 79534758 ~ 79535572 (-) True G90081
TU98450 other downstream 1135985 79049811 ~ 79050491 (-) True G89418
TU101177 other upstream 753943 80940724 ~ 80941674 (-) True nphp1
TU101249 other upstream 841127 81027908 ~ 81028612 (-) True G91941
TU101251 other upstream 844051 81030832 ~ 81031358 (-) True G91943
TU101255 other upstream 848794 81035575 ~ 81036138 (-) True G91947
TU101313 other upstream 994043 81180824 ~ 81181463 (-) False LOC110532756

Expression Profile