RNA id: TU99733


Basic Information

Item Value
RNA id TU99733
length 4150
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G90542
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 80403515 ~ 80408049 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAAACAGGGTATCCCAAACTTTATTTTCTGTGTCAGAAGTGTACCATGTAGAGTAATCACAGTTAGTGTACTTCTTCCTATTAGTTGGTGTGCaacacaaagaaaaaaaacacagacatGAACAAAAATAAGACAAAATCATGATATTCTATCAATTATAAtcaataagacaaaacaaacagcaaacttAACCCTGTAAGAGAGACAGCAAGAACATGACAGATCGACAGGGTGAGCTTGAGAGAAAGTtaaagagggagaggcagggaatgCAAGAAGggaaaattagagagagagatattagaaCACTGAAAACTACAGGTCCATCTGGGCGGCGGGTGGGTGGTGCTAATCAGATGACACACATCAAGTACAGACAGACACTCaatagggacagagacagataggcatgtacagtaccagcctgccagcgagacagagaggcaggcacATACCAggtagacaagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacatccatcTTGAGACAAAGAATGAAACCATCCCGAAGAAATTACACTTCTCAGGTATCAAAGACGAAACACTGCTCAGCacagcaggaacagagagagagagagcaaaacaaGCACTTAAGCAAACTACTTCTCCAAAAAGGCAATATTTGTCATTCTTGAGTTTAGTCAGGGTCTTAAAATAAATATGTAGAATTCTCTAAGATATGTGGAGGTATCAGACCTCTCTCTGTtaacactatacagtatatacatatgatctCTTCATGACAAAATAGCTTTTGGTGTACATAGTTCTCTCACACTGTCAAATAACACAACCAGCCATGTCATTATTAGCAAGCAGTGTCTTTTGTACAAATTCCCATGCAACTCCCTTAAGATACATACCTCTTTAAGTTCTCACCCTCCTTCAACAACAGCAGATATTGCCTTTTTTAACCGAATGTGCAATATTTAACTTCAAATAAAACATTCTActacatgagtgtgtgtggggggggggggggggggggggggttcagctCACAACCCATGTGACATGGAGATGCAGGGAACCGAGCTCGGGTGAGAGACCCGAAGCCCTATCACGTCCAAGTCCCCACTGGGATATAGTGGATGGGAGACCCGTTTAACCAACTGCCCCAATCCCCTTCCACACGGAGGTGAAGCCACACATACTGGAGACAGATTTGGGCAGCCAGTCGGGAACAGCCCAGGCAATTGGTAAAGTTGGGAACCAAGCTCGGGTAAGGGTGGGGACACAACAAGTCCAAATCTATACAACATTCAAACCTCCATCAACATCAACGAATGGGATACTGCTTATTATATACAGACATGTTATCATTCATGCACATTGTGAACAAGTAGCACATTAACATTCCAAAATATGGACATGGGGGGGGGGTaagaggatacagagagatgcTGCGCTGCACAGTCACGGTGTAGACACACACCATAGCGACACATGCTGGGCAGGAGAAGTCCTTGTGCTTCACTGCACCAGTACACAATGTATGGTATGGCTGTACTTCACATGttatttcttcttcttctttctcctcttcctcctcttttcaTTTGTAGTTGGATAACTTGATATTAGGGTTTGAGGTCTTTTTAAGTATTTAATTGTCATAGTAATGTTTTCAGGTCAGCGAAATGTAATATAATCCCGCAACAGCAGGGTCACCATCAGCATATAAGCACTGTCATCCTGTTCATTACAAACTCGGGAACCAGTGCAATGTTTTTCCTTCACATCGAAACATCCCACCCCACTCCATACAAAAAACATATAGAGCTACTCTAGAGCTTGATGCCACCACCTTCATAATTAACCAACAGCTACTGTAATAGAAACCCCCACACCCCACCATAGTAGAATGAACCTTAAAAACTCTTACCACAGTTGGTCATTCGTGAACAAGTTCACTTTAGACCAGGTAAGCAAGGGGACCCGCAGGAATTAACCCATCCCCATGAAATGTTAATGCTTTTATACAAATTTGTCATTAGAAATGTTCTGTTTTGGTTAAACAACAGCAAGACTTTTAGTACCGCAGAGGGATCTTTTTGGTGTTGTTAAGAAATGTCAGTGTGTTAGAAAACCCACTACTATTCTGGCTAAGCTGTTACTGGAGTTTCCATTAGAAATAGTTCCCTTTGGCAAAAGAGGAGTAAACTGCACTTGACTTCCATATTCAGTgcctccggaaagtattcagaccccttgaccttttacaCATGTTTTTCTTActctaaaataatgttttttaaaatcatcatcaatctacacacaataacctataatgacaaagcaaaaacaggttttgggAATTTTTTGCAactttattgaaaaaaaaaattgaaataccttattcagaccctttgctacgagacttgaaattgaactggtgcatcctgtctccattgatcatccttgatgtttctacaacttgattggagtccacctgtagtaaattcaattgattggacatgatttggaaaggtctaTATTCTCCCAGAGTTGACAGGGTAtggcagagcaaaaaccaagccaagaggtcgaaggaattgtccatagacctccgagacaggattgtgtcgagccacagatctggggaagggtaccaaaacatgtctgcaggcCTCCATTCTCcccattcttaaatagaagaagtttggatccaccaaggctcttcctagagctggtcacccggcaaaactgagcagtcgggggagAGGGGCctgggtcagggaggtgaccaaaaacccaatggtcactctgacagaactccagagaccctctgtggagatgggagaaccttccagaaggacaaccatctctgcagcactccaacaatcaggactttatggtagattggctagacggaagccactcctcaataaaaggcacgacagcctacttggaatttgccaaaaggcacctaaaggactctcaaaccatgagaaaccagattatctggtctgatgaagccaagattgaactctttggcctgaatgccaagcgaaACGTCTGgggaaaacctggcaccatccctacagtgaattATTGTGGGACTGGAACAAATGGAACAAattacagagatatccttgatgaaaatctacTTAAGAGTGTTCAGTTCCTCAGACATGGTttgcatacttatgtaaatgtgatatttcatatatttttgtaattgcatttgcaaaaatgtaattaaaaacaaCATTGTTTTCTTTGTcagtatgtggtattgtgtgtagattgatgaggaaaaaaactatttaatccattttagaataagcctgtaacgtatcaaaatgtggaaaaagtcaaggggtctgaatactttctaaacgCACTGTATGTACTTTAATCTAGAACCTTCTCGGGGCTGCAAATTCTGGGGTGAgaaatgacaaaaaaatacaaaatcttGCTATGTTTATAATTTTCTAAACCAAACTACAACTCTATGATTACTTCTACTTCATTATCACGCTACACATCAAGTATAAAACAAACTCAGTAGGAAACTCAGGGTATTCATCATACCTTTAACATAAACATTTTATTGAAGGTGTAAATATTGTGGACTGCCTTCATCTTCCACATATGAATTGATCTGTTTGTCTAAACTGGATGTGTCGTTTTGAATGTAAACCCTTATATCTCGAGACTGCCAGTAAGGTGGATTTAAATGATTGCATCATTAAGACAAAAGCTTTTTACCTCTGAAAAGAGAAAATACCCAGCCAATGTATTTCTCACCAGCTTCACTTTGAACTTCTGTAAAATGTCTCGATAGGGCTACTGCATTATAGAAACAGTTGAATCTACACTTCTGTCCACCATTACAATTGATGTTTTTATGTTCAAGATATTGTTTGATGGAATATAAATGAAGATGTGCAGCTcagtggagagagaagagcatGTGGGTTAAGTGTTGAGGGCAGGTTTAGGATAGGGGTGGGTTAAGTGTTGAGGGCAGGTTTAGGATAGGGGTGAGTTAAGTGTTGAGGGCAGGTTTAGGATAGGGGTGGGTTAAGGATAGGTGTGGGTTTAGGATAGGGGTGGGTTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99718 lncRNA upstream 45915 80357379 ~ 80357600 (+) True G90528
TU99717 lncRNA upstream 47791 80355319 ~ 80355724 (+) True G90527
TU99625 lncRNA upstream 136055 80262755 ~ 80267460 (+) False arhgef33
TU99628 lncRNA upstream 136055 80262755 ~ 80267460 (+) True arhgef33
TU99613 lncRNA upstream 185463 80217712 ~ 80218052 (+) True G90446
TU99749 lncRNA downstream 29162 80436882 ~ 80439031 (+) False G90556
TU99750 lncRNA downstream 29162 80436882 ~ 80438806 (+) True G90556
TU99870 lncRNA downstream 246185 80653905 ~ 80757902 (+) True G90671
TU99924 lncRNA downstream 320803 80728523 ~ 80754315 (+) True G90724
TU100288 lncRNA downstream 350275 80757995 ~ 80758220 (+) True G91051
XM_036986600.1 mRNA upstream 17102 80383566 ~ 80386413 (+) False LOC110530352
XM_021613346.2 mRNA upstream 17102 80384541 ~ 80386413 (+) False LOC110530352
XM_021613337.2 mRNA upstream 17102 80384640 ~ 80386413 (+) True LOC110530352
XM_021613323.2 mRNA upstream 39489 80359816 ~ 80364026 (+) True LOC110530346
XM_021613199.2 mRNA upstream 139781 80248099 ~ 80263734 (+) False arhgef33
XM_036986726.1 mRNA downstream 606985 81014705 ~ 81056605 (+) False LOC110532748
XM_021616873.2 mRNA downstream 606986 81014706 ~ 81056605 (+) False LOC110532748
XM_036986735.1 mRNA downstream 614143 81021863 ~ 81056605 (+) False LOC110532748
XM_036986762.1 mRNA downstream 649275 81056995 ~ 81078956 (+) False LOC110530417
XM_036986746.1 mRNA downstream 655003 81062723 ~ 81078956 (+) False LOC110530417
TU98806 other upstream 638156 79751773 ~ 79765359 (+) True acoxl
TU98716 other upstream 853864 79549017 ~ 79549651 (+) True G89667
TU96076 other upstream 2833045 77570015 ~ 77570470 (+) True G87159
TU95475 other upstream 3279088 77123935 ~ 77124427 (+) True G86614
TU94822 other upstream 3767579 76631745 ~ 76635936 (+) True G86019
TU100301 other downstream 357394 80765114 ~ 80766155 (+) True G91064
TU100812 other downstream 1130611 81538331 ~ 81541400 (+) False G91541
TU101077 other downstream 1469819 81877539 ~ 81879178 (+) True G91779
TU101096 other downstream 1498412 81906132 ~ 81907395 (+) True LOC110530526
TU101849 other downstream 1720924 82128644 ~ 82148774 (+) False LOC110530572

Expression Profile