RNA id: TU101251


Basic Information

Item Value
RNA id TU101251
length 527
RNA type TUCP
GC content 0.64
exon number 1
gene id G91943
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 81030832 ~ 81031358 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTCCGTGAGCTCCAAAGTACTCCGACTGTGGCCGTGGTCTGTGTCCACGGCTATGAGGCAGAGTGTGATAACCTGGGTACCCAGGACTGGCCCCATTAGACCCCTCCCCTTCTGGCTGCGCCCCAATGCCTCCTGCTCGCATCTTTGGCCtcaccaccacctctccacctccagctccccgtaacctcctccactcctccatttcGTCTAGGGGCCTCAGCTCCTCAGGCTCCTCGTCGGTGGTGGGCCCCGAGGTGGTGGGCTCAGCCCCTGGGCCCAGGAGACCCAGGAAGTCCTGGAGCTCAGTCTCCTTGTCGATGATCACCCACTCCTTGCTGTCAAAGTCTTCCTCCTCGGCGAGTGGTACAGACCGGATGAACGCGTTACTGTGGGCCTCGGGGTCGGCCACAGAGGCTACGGAGACCTCTTGACCTGGTCTACCACTGCCACCCTGCCGgtccccacctcctccctccaggGAGTGCATCTGGGCCGGCTGGGAGGACTGCACGTGGCGGGACGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101250 lncRNA downstream 1813 81028674 ~ 81029019 (-) True G91942
TU101247 lncRNA downstream 7304 81023251 ~ 81023528 (-) True G91939
TU101236 lncRNA downstream 11464 81018820 ~ 81019368 (-) True G91932
TU101234 lncRNA downstream 14476 81016136 ~ 81016356 (-) True G91930
TU101232 lncRNA downstream 15677 81014533 ~ 81015155 (-) True G91928
TU101254 lncRNA upstream 3084 81034442 ~ 81034660 (-) True G91946
TU101262 lncRNA upstream 7433 81038791 ~ 81040113 (-) False G91950
TU101261 lncRNA upstream 7612 81038970 ~ 81040113 (-) True G91950
TU101258 lncRNA upstream 9975 81041333 ~ 81044209 (-) False G91949
TU101259 lncRNA upstream 9975 81041333 ~ 81044209 (-) False G91949
XM_021613398.2 mRNA downstream 39118 80975992 ~ 80991714 (-) False LOC110530390
XM_021613408.2 mRNA downstream 39118 80975992 ~ 80991714 (-) True LOC110530390
XM_021613423.2 mRNA downstream 48151 80975992 ~ 80982681 (-) False LOC110530390
XM_036986674.1 mRNA downstream 64189 80940215 ~ 80966643 (-) False nphp1
XM_021613479.2 mRNA upstream 137444 81168802 ~ 81174060 (-) False ppifa
XM_036986800.1 mRNA upstream 137444 81168802 ~ 81174063 (-) True ppifa
XM_036986841.1 mRNA upstream 144487 81175845 ~ 81221040 (-) False LOC110532756
XM_036986836.1 mRNA upstream 144487 81175845 ~ 81221041 (-) False LOC110532756
XM_036986839.1 mRNA upstream 144487 81175845 ~ 81221041 (-) False LOC110532756
TU101249 other downstream 2220 81027908 ~ 81028612 (-) True G91941
TU101177 other downstream 89158 80940724 ~ 80941674 (-) True nphp1
TU99544 other downstream 888675 80141559 ~ 80142157 (-) True G90382
TU99325 other downstream 1132992 79883537 ~ 79897840 (-) True LOC110530200
TU99326 other downstream 1142652 79886675 ~ 79888180 (-) True G90190
TU101255 other upstream 4217 81035575 ~ 81036138 (-) True G91947
TU101313 other upstream 149466 81180824 ~ 81181463 (-) False LOC110532756
TU101510 other upstream 576120 81607478 ~ 81617324 (-) True LOC110530475
TU101970 other upstream 1129049 82160407 ~ 82161743 (-) False G92566
TU101980 other upstream 1129049 82160407 ~ 82161743 (-) True G92566

Expression Profile