RNA id: TU101260


Basic Information

Item Value
RNA id TU101260
length 2844
lncRNA type intronic
GC content 0.37
exon number 2
gene id G91949
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 81041333 ~ 81044209 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTAATCATATTTTGGTTGTATACAAGCGTCTGAGAAATGTCTAGTATAGTTGACATACATGGATAAAAAAAGGCACAGAAAGTCAATAGCACAGCATGATacatataatactgtatatatgtacatgttATGTTCTCTGTTTTCTTTTAAATTGCTCAACCCAGGTGTGATTTCATGTGTAGCCATGGTTACAAACAGTGCATTGGCAAATATATGTACAGCTGTGAAGCAAATATACAAGATCACACGACGAGATGACATCAAAGTGATGAAGCGTTGTCGATCAATGTACTAATATCCATTTTTTGTGTGTTTCTTTAAAAAATGGCTCGATATACATGCTTTTAAATACATCATGTTATACATAACTCTACAGGGTTATTGTGATACAAAAACAAATGCTTCTAATATATTCACAAAAAGAGAATAGtgactgtactgtcctctaccgaGAGACACTCACGGATCACGATGTTGTTCAAATAATGGTTGACATCTTTTACATTCGCTCCAAAGTGTTAAAAAACTATGATTGCCACTGTATTATCTTACATATTCGCATTCCAACCCACCTCCCACATACATTATTTGCAATGAACAGGAGAATAGTTCCGTTTTTCCAGTACTGCGAGTCATTAGACAGCCTTTGAAGAATTTGAGTCGAGAAGGACTTTTATACAAGagtctcttctttcactgaacagatgtaggatcttcatttgagcacTCTTTTGATGCGGAGAATTTTCCAGCACGGcgggaaatgcaaacttgtagtgcatTTGAGTTGTGTTTGTcgattccactttgaaatttcagacttgatttgtatGGTATGAACCATACAAAAATGTCAAATCATTATAATCcagataataattcacatttcctggtgctgaaggattattttccttctgtagcaaactggatcaaattaagatcctacatctgtatcacTCACAGacacatttgtatttgttttatttctcctttatttaaccaggtaggccagttgagaacacctttatttaaccaggtaggccagttgagaacacctttatttaaccaggtaggccagttgagaacaagttctcatttgcaactgcgacctggccaagattggGACACTGGGCAATAAATAAGTGACTCAGAAACCAGACAATGTTTTTCCTCTTGCCGTCTGTCTTTCCACAAGCACAAATAAGTCACCAAGATCTACATGCAATCAGGACAGTACACACAGGACTGGAGCAACATTACACAGGCTACTAAGCAGCATCATTACAGTATATGATTGCATGCCATTTTACATGAGAATGCTTCTGTAGGAAAACTCCCAAAACCCACTTCAACATTACCAGACAAACTAAATGTTtttaacaaatgttttaaacagatGCCTACCAACCCTACTTAGGTATTCACTGATCCGTGGGTGTACTTTTCTGGTTAGGAAATCAACCAAAGTGCAGCAGATAAACTGTAGACCAGTGTAAACAAGGACCTATCACATCAGACTTTACTAGTTCAAGCGAAGTGGCGTCCAATATTATTTATTGTACGAACTGAACTGAtagggcccatattcacaaagcatctcaagAGAAGGAGTGCTAATCTAGCATACATCTTTCCTTTTAGATCATAGGGaattagattacatggacaggggatacctgatcttagatcagcactcctaccctaAGATGCTCGACATAGAGCCTCAGAACTAAGCTTCATCAGAGGGTGATGAATACATTCAGTGAATGTCATTATTGGATCACTGAAAACAGTGAAATGGATGGAAGACCAACTGGGCAACTgtattataccccccccccccccccccattatacAATCTAGACATGGCCTCAATTCAATTAAACCTGCATTGTGGTGTTAAAGCAGTATAGCTCTTCTTTTCCCATGGTCAAATTAAATGAATTGATAGAGAGGTGGTGGGTCAAATCCATAGAATTAGGAATCAGAATGGATCATAACAGGAGTGGTGTGATGGAAAACATCCAATCATGTTGATTTGATCAACATTGGTGTCATATTGGCTTAGATGTGATGGTAGGAAGATTTGAATTTCACATTGACATAAATCAATGCCTACTAATAATTAAATAGTGTCTCTATGGTTAAATCCTGGATTTAACCATAGAGACATAAATCCTACTACTACTGGCCCAAAGCGAGCAGCTCCGGCACCCCCTTGCGGCAGGGATCCCGGTTCAAACCCCACATGAGCCCTGCTGCTCCTATCCTGTCATTAAATAATTATTATGGAAAGTAGTTTGGAAATTCtcctttgtaaaaaaataaaaagcactAGTACTAGGTAGAGAGGTAAGTTTGTAAACAAAGGCACTGCGTAAACATTACTAGGCCAGGTTCAATTGAATTTCAGCCTAAGTCCCCTccttttaaaacaattacagtagTTAGAAAGACATCTTGACAATATGGATATTTCACAAATCTATAGTTAAGACTGGTGCATCAAAATGAAGGTGTGTTCTTAACAAGAGCCGTGTCCTCTGTCCAGAACGAAAGGCAAGATAAATAACAGTAAACTAGATCAATTATGGAAAATAAATCATTATTGCTGGTAACACTGGTAATACTGTCACAACTGAAACTGAATACAATATGATAGACATGTTATAAACGTGTTATATACATCTTATAAACATTTATATGCAGTAAGAAAGCAGCATTCCACTGCAATGAGGGAAACTATTGCCTATCAATCTACTGCTTATCAATCTACTGCTTATTAATCTATTGCATATCAATCTATTGCCTGTCAATCTATTGCTTATTAATCTATTGCCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101262 lncRNA downstream 1220 81038791 ~ 81040113 (-) False G91950
TU101261 lncRNA downstream 1220 81038970 ~ 81040113 (-) True G91950
TU101254 lncRNA downstream 6673 81034442 ~ 81034660 (-) True G91946
TU101250 lncRNA downstream 12314 81028674 ~ 81029019 (-) True G91942
TU101247 lncRNA downstream 17805 81023251 ~ 81023528 (-) True G91939
TU101246 lncRNA upstream 607 81044816 ~ 81045797 (-) True G91938
TU101243 lncRNA upstream 5697 81049906 ~ 81055756 (-) True G91935
TU101263 lncRNA upstream 11896 81056105 ~ 81056419 (-) True G91951
TU101264 lncRNA upstream 12656 81056865 ~ 81057248 (-) True G91952
TU101265 lncRNA upstream 27568 81071777 ~ 81078952 (-) True G91953
XM_021613398.2 mRNA downstream 49619 80975992 ~ 80991714 (-) False LOC110530390
XM_021613408.2 mRNA downstream 49619 80975992 ~ 80991714 (-) True LOC110530390
XM_021613423.2 mRNA downstream 58652 80975992 ~ 80982681 (-) False LOC110530390
XM_036986674.1 mRNA downstream 74690 80940215 ~ 80966643 (-) False nphp1
XM_021613479.2 mRNA upstream 124593 81168802 ~ 81174060 (-) False ppifa
XM_036986800.1 mRNA upstream 124593 81168802 ~ 81174063 (-) True ppifa
XM_036986841.1 mRNA upstream 131636 81175845 ~ 81221040 (-) False LOC110532756
XM_036986836.1 mRNA upstream 131636 81175845 ~ 81221041 (-) False LOC110532756
XM_036986839.1 mRNA upstream 131636 81175845 ~ 81221041 (-) False LOC110532756
TU101255 other downstream 5195 81035575 ~ 81036138 (-) True G91947
TU101251 other downstream 9975 81030832 ~ 81031358 (-) True G91943
TU101249 other downstream 12721 81027908 ~ 81028612 (-) True G91941
TU101177 other downstream 99659 80940724 ~ 80941674 (-) True nphp1
TU99544 other downstream 899176 80141559 ~ 80142157 (-) True G90382
TU101313 other upstream 136615 81180824 ~ 81181463 (-) False LOC110532756
TU101510 other upstream 563269 81607478 ~ 81617324 (-) True LOC110530475
TU101970 other upstream 1116198 82160407 ~ 82161743 (-) False G92566
TU101980 other upstream 1116198 82160407 ~ 82161743 (-) True G92566
TU102078 other upstream 1249604 82293813 ~ 82294303 (-) False LOC110532782