RNA id: TU101243


Basic Information

Item Value
RNA id TU101243
length 5851
lncRNA type antisense_over
GC content 0.40
exon number 1
gene id G91935
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 81049906 ~ 81055756 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGTCTTTATTGTCGATCATCAGTGATCAAATGGCAACTTGTCAGCAAGCTAGTTCATATAATAAGCAGTTAATTGGATAATGATTTAATTCATGAAACACATTCATGCAAAGTTCACCCTGGATTGGGCAGATCGATAGTCCACAGAGAAGGGGAACAGAAAACATATTGAATGTACCCATAACAGAAtactatctttctccctcttcctaaCATCACATTATGTATTCATTGATAAAGTACAACAGTCAATGCTTTAGATTGGATACTTTATCTTGACATTCTTAAAAATGTAGGTACATGTAGTTTGTAATAGCCTTGATTGGTTAGCATTTTTCCGCATTTCAATTTACATTTAGTTATGAATGCTGTAGTTTGTCATCGCTGCAAGTTTTTTCTTCCTGATTACATTCAATATTAAGTTCCATCTCTCTCACCAAACAATCTTTTGAATCATGTCAAATTACACACAgatatttaacacatttttgttAGTTTGAATGCAGCAGCATTATTAGAGCTTGAGGAGGTCTCATCCAACAATTTGATACTTCTGAAAAATAAAGTTAACAAAACAAatgcaattacattttttttctcaacaGTTCTTTGAtttatcaaataaaaataaagatgACCTTTTGTCTCAAGAAGTAACTATATTATGTACAATAAACTATTATGGAAAACCAGAAGCAAGTATATTTCAAGGCATGCCAAATTTCTTAGAAATGCTGATTGGTAAAAAAGTAAAATAGATGGACCAATTAAAAGCAAACTTTTATTAGTGTGAGCCAATGAAATTGCTTCATATTAAACTGTGAATGATTGGCATCACATAGCAGCTCTACCTGAGTGCATGTCTCACTAAATTGTTCAAGACATTTTGGGGTGACATCAGAAAGTTGTTGGGGTATTGTATGAAGCAAAATAAATGGATTTGAAAACGTATTGTACTAGAGTAGATGTTTCGTTGTATTGTAAGTTGTATTATCCTTGTCATTTGATGAGAGAAATTATGATTCCTGTAAGATAAAAGGGTAACACATTATACGTGAAGCACAGAATAACATACTGAGAAAAGACAAAGAAACATAGTGACATTTAAAgtgcaaaataaatcaaattctacagtgatgtttttaATATGTAAGTAGGTACACGGTATGTTCAGAATCATAGGATTTTGTAACTGGTAAAATGTTTTAGCAAAATGTCGTAAATGAGAATGATTGATGATTTACACCTGAAGTAAACATTCTATGAAACTGTATAACTAGCACTACTTCCTCATGTGTATAAACTGTGAAGGACTTTTCAAAATGTTCAGAACTGGGAGTGGAGAAAAATGGGGTAGGGCCATGCTATTTCATTTTTagtcgggggggggggttgagtatTTTTTTGTATCTAGTCCAGGTTAGATTAAATGTCATATTGCTCAAGAGTTTGAGAAGTAGTTGCTTATTACATCTCAATGTGTGCCCGATGCTGTCCCTCATCCCTGATTATCTGCAGGGTGCGCAATATTAAGTGCtcctagtgtggtctcaatcaaatgatccatattctataggctataggcctaggcTATACGAAGAGCATGCTCGGAGAAGCACAGGGCAAAGTTATATTTCCAAGAAAATGTACTTCCCGTGTTTTTgcgctgctgggatggtgtataTAAAACTAGGCTACACAGCATTATACACTTCAATGGATAGGCTATCCCAATCATGAACCCCGGCCTGCCCTGCTCTTGCTGATGTAAACCCttttgtgctgcctaaccaatgacTGTGCTGTATACGTTGGCACTTCAGGAGATGAGTGAATGGCTTCTTTTGAAAATAATgttgacatttttattttattttattttttacaattcctgTGCGTTCGGACTGGGCCTGTTGAtgtcctgttcagtttgagaGGGAAAGCGTGGCGATGAAAAGGAGGACCGGTGGTAAGCTTGCTACTGCTTTAATTGATTTGAATAAAAACGATATGTTTCGCTGCCCATAATGAATATATTTCTCAGActtattgacctcacaataagccagattCTAGTAATTTACACAACCAACATTACTATGAAGCACCAGCCACAGATATTTGAGAAGGCTTAATTCATTTAAACggtcttcattttaatttgactttagGCTACTAACAACAAGAGCGTTTTGTGTTGAAGACTATGTCTTCATATTCAAGGAAGACGAGCTAGGCCTTCCTGTGTGACAGGAGGTAGGTCTTCATATTTGAGATAGGGCTTGTGATTGATGCGATTGGCTTGATGAAACATGGCTCaaacctgatgaatttactgcGTTACATGAGGCCTCTCcttctggttacactagtgaccatatccccacACATCCTGCAAAGGCGGagatgttgctaacatttatgacagCAATTTTCAATTTACAACGTTTTCGTCTTTtggcttctagtcatgaaatctatgcagcctactcagtCACTTTTATAgatactgtttacaggcctcctgggccatatacagaattcctcactgagttccctgaattcggATCTCGTAGTCATGCCagataatattttattttatttagactcagtgggttttgtaccaaacacactaaaagtggcagtaataaagccgcTCCGTAAAAAGCCTTgagataaaaaaaagaaaatatctgccaatatcgaatctcccattcctctgaaATTGTTATTTAATAAAAAGCTGTTGCTCAGCAACTCACTGCTTTCCTGATGACAAATAATGTAAACTAAATGCTCCAGTCTGGTCTTAGACCCAATCGTAGTACAGAGACCGCGAtggtgaaggtggtaaattacattttaatggtgtcagaccaaAGCTCTgcgtctgtcctcgtgctcctagacatTTGTGCcgcttttgacaccatcgatcaccacattcttttggagagattggaaaccgtAAGTGGTTTACACAGACGTTTATGtgtggtttagatcttatctgtcgaaaATATATAATtctgtctctgtggatggtttatCCTCTGAAAAATCCAAATTAAGTTTGGGTGTTCCTCAAGGTCTGTTTTAGGAGCACTATTTTTTTCACAATAGATTCTACCTCTTTTGGATGTAattcggaaacacaatgtcaactttcactgctatgcagacaacacagctgtacattttgatgaaacatggtgaagccccaaaactgcctaccctggaagcctgtgtttcagacataaggaagtgaatggtggcaaatgttttacttataAACTCTGACAAaagagagatgcttgttctaggtcctaAGAAACAAAGAGACCTTCCGTTGAATCTGACagttaatcttgatggttgtacagttgtctcaaataaaacctaacctacaaagcattacatggacttgctcctacctatctctcagatttggtcctgccgtacatacctacacgtacgctacggtcacaagacgcaggcctcctcaTTGTTCCTAGTGTTTTTAAGTAAGCAGCTAACGAGGGCTTTCCCCTATAGaactacatttttatggaatggtctgccgatccatgtgagagatgcagaatcggtcttgacctttaagtctttactgaagactcatctcttcagtaggccCTATGATtaagtgtattctggcagagggGTGTGACGGTGAACGGCAAGGCTCTGGAGTGACGAACCACCCATGCTGTCTCTGACTAgctggctcccctctctccaccgggTTTCTCTGCCTCTGTCCTTATTATGGGGGCTGAGCTACTGGCTTGTTAGTGCTCTCCCatcccgtccctaggaggggtgcatcatgTCGTGCCAGGCTTTATTCCCGCTTTATtcgacttgagtgggttgagtgattgatgtgatcttcctgtccggttttgcaCCCCCTCGGGATTGTGCGGTAGGGGATATCcaccttgtctcagggtagtatgttggtggtctgttgatatccctgtggtggtgtgggggctgtgctttggcaaaataggtggggttatatcctgcctagtTGACCCTGTTCGGGGGTATCGTTGGACGGGGCCACAATGTCCCCCGACCACCCCCTGTGTCAGTCTCCGGTATCTATGCCGCAAtaaatagtctatgtgccggggggctagggtcagtctgtcctattTGGTGTAATTATCATGTCTTATCTGATGTCCTGTGTCATTTTAAGTATGCGCCCTCTAATTCTCCaatctctcacttgctctctctctcccctccaggaggacctgagcccttgaaCCATGACTCAGGACTACTTGGCCTGACAACTCTTGGCTGTTTTCCCTCCcaagtccacctggtcatgctacAGCTCAATTATTGCTgatctgcctgcggctatggaatcctgacccgTTCACTGGACATgctccctcgcactctctctctgtccccttctctctataccacacctgctgtcttaacctctgaatgctcagttatgaaaagcaaactgacatttacccctgaggtgctgacctgttgcaacctctataaacactgtgattattatttgactctgttggtcatctatgaacgtttgagcatcttgaagaacgatctggccttaatggccatgtactcttataatctccacccggcacggccagtagaggactgaccacccctcagagcctgactcctctctaagtttcttcatAGGTTCCAGTCTTtataaggagtttttcctagctaccgtgcttttacatctgcattgctttctgtttggggttttagcctgggtttctgtataagggTCTAGTCTGCTATTTAATAAATACATTGTGAAGGATTCGTGACAAGCTACAGGCAGGCAGGAGTGGTCAGCATTTCAACAGCACATCAAAAACAGCACTTTAATGACATGCCTATACATTTTTCATTAAGGCTGTTTAAAATAATTACTTAGAATGAAATATCAATGAAACAAAAAAATCCTAATTGGGCTACACTGTCATTCTACAGTGCCTTTGAATTGACTTTTAGAAACATGAGTTTGGCCCGTCTTTGGTTTGAGGATCATGTGGTGAGCTATGCATGTCTATTTTGTAACAGGAATGTAACGGAATAAAATAGAATGAATTAGAAAATGATAGTTTTACAATTGAAATAAGTTGCAAgtgcatataggcctacctgatgatctGCGGCTACTGTGTTAAAAAAACAAATTCATTTATGATCAGATACTCAGATACTGGTTCGGTTGTTCTACATGTTTACAGTTGATAGACAACTTTAGCACTGTTCCAAACTGAAGACGATCCTATTTTTTTAACAATAGCGTATAGAAATCAAAATGTCTCCTGTGCTGCAGCATGCGCTCATTCGTTGTCATGCACTGTTGAGGTATTAGACGAAATTCTGCTTCTGAGTTGATAAAAGGCAATTTTTTTCTCAGAACTGCAAATAAGATGATAAGATTCATGcagtgcttttattataaagcAGAGCTTTTCACCACTACCCTTGTCCACAGTGGTCTGCGAatccacaaccttctggcccacCGCCCTTGCTACTTAGCCATGTAATGCTTATGAAACGGTTTCATGTAATGCttacagtttctaaaactgcatatctaaggctctTGTCTGTCCTACGAGTGAGGGTAAACATTAGGCATGTTGTCTGCTATCCACTTTGTTTGAATTATTTTTTGGGGTATAGGGGAAGGTCACTAGTGTTTTTTCAAGTGTGCAATATTTTTTACTGAAGGGAGGGACATCAATTTTCTTTTCCGAGAGGTCTGATTTCCTCCAGGTATCCCTCATTATAAATAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101246 lncRNA downstream 4109 81044816 ~ 81045797 (-) True G91938
TU101258 lncRNA downstream 5697 81041333 ~ 81044209 (-) False G91949
TU101259 lncRNA downstream 5697 81041333 ~ 81044209 (-) False G91949
TU101260 lncRNA downstream 5697 81041333 ~ 81044209 (-) True G91949
TU101262 lncRNA downstream 9793 81038791 ~ 81040113 (-) False G91950
TU101263 lncRNA upstream 349 81056105 ~ 81056419 (-) True G91951
TU101264 lncRNA upstream 1109 81056865 ~ 81057248 (-) True G91952
TU101265 lncRNA upstream 16021 81071777 ~ 81078952 (-) True G91953
TU101366 lncRNA upstream 227341 81283097 ~ 81283317 (-) True G92044
TU101368 lncRNA upstream 230736 81286492 ~ 81287073 (-) True G92046
XM_021613398.2 mRNA downstream 58192 80975992 ~ 80991714 (-) False LOC110530390
XM_021613408.2 mRNA downstream 58192 80975992 ~ 80991714 (-) True LOC110530390
XM_021613423.2 mRNA downstream 67225 80975992 ~ 80982681 (-) False LOC110530390
XM_036986674.1 mRNA downstream 83263 80940215 ~ 80966643 (-) False nphp1
XM_021613479.2 mRNA upstream 113046 81168802 ~ 81174060 (-) False ppifa
XM_036986800.1 mRNA upstream 113046 81168802 ~ 81174063 (-) True ppifa
XM_036986841.1 mRNA upstream 120089 81175845 ~ 81221040 (-) False LOC110532756
XM_036986836.1 mRNA upstream 120089 81175845 ~ 81221041 (-) False LOC110532756
XM_036986839.1 mRNA upstream 120089 81175845 ~ 81221041 (-) False LOC110532756
TU101255 other downstream 13768 81035575 ~ 81036138 (-) True G91947
TU101251 other downstream 18548 81030832 ~ 81031358 (-) True G91943
TU101249 other downstream 21294 81027908 ~ 81028612 (-) True G91941
TU101177 other downstream 108232 80940724 ~ 80941674 (-) True nphp1
TU99544 other downstream 907749 80141559 ~ 80142157 (-) True G90382
TU101313 other upstream 125068 81180824 ~ 81181463 (-) False LOC110532756
TU101510 other upstream 551722 81607478 ~ 81617324 (-) True LOC110530475
TU101970 other upstream 1104651 82160407 ~ 82161743 (-) False G92566
TU101980 other upstream 1104651 82160407 ~ 82161743 (-) True G92566
TU102078 other upstream 1238057 82293813 ~ 82294303 (-) False LOC110532782

Expression Profile