RNA id: TU100691



Basic Information


Item Value
RNA id TU100691
length 318
lncRNA type intronic
GC content 0.39
exon number 1
gene id G91432
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 81287273 ~ 81287590 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccctcttccttctATTTCTCTCGACTCCTGCTGGAAAGTACTGGAAAATCCCTGAGATGAAAGCACAGCTAGCTACTCCATGTCCTTACTATCAAAATAACACAGAGAAATAATAGTTCATGTTATCTGTCTCAGagcagaaacatgtccatcactGTCTGATGAAACAGCTTGCTGTGCTACTCTGCTTCACCACTTCTTTCCAAGGatgataaattcattaaaaagtaCTGAAAACTCATTTTGAATTGTGGGTAATAATGGGTTTTTCAGGGTACATGTGTCCCAAAATGTGTTTtcaagctttgtgtgtgtgtg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU100688 lncRNA upstream 1711 81284569 ~ 81285562 (+) True G91429
TU100581 lncRNA upstream 122679 81160011 ~ 81164594 (+) True G91327
TU100608 lncRNA upstream 179501 81107300 ~ 81107772 (+) True G91352
TU100569 lncRNA upstream 209026 81076625 ~ 81078247 (+) True G91316
TU100570 lncRNA upstream 217801 81068763 ~ 81069472 (+) True G91317
TU100694 lncRNA downstream 3095 81290685 ~ 81290919 (+) True G91435
TU100697 lncRNA downstream 5492 81293082 ~ 81293299 (+) True G91438
TU100698 lncRNA downstream 7791 81295381 ~ 81295597 (+) True G91439
TU100699 lncRNA downstream 8186 81295776 ~ 81296086 (+) True G91440
TU100700 lncRNA downstream 11689 81299279 ~ 81299508 (+) True G91441
XM_036986783.1 mRNA upstream 112174 81084034 ~ 81175099 (+) True zcchc24
XM_036986774.1 mRNA upstream 128848 81084034 ~ 81158425 (+) False zcchc24
XM_036986762.1 mRNA upstream 208317 81056995 ~ 81078956 (+) False LOC110530417
XM_036989902.1 mRNA downstream 43956 81331546 ~ 81332112 (+) True LOC118966718
XM_036952491.1 mRNA downstream 332630 81620220 ~ 81635022 (+) False ipyr
NM_001165208.2 mRNA downstream 332675 81620265 ~ 81635014 (+) True ipyr
XM_021613563.2 mRNA downstream 347804 81635394 ~ 81641798 (+) True LOC110530473
XM_021613537.2 mRNA downstream 354383 81641973 ~ 81645418 (+) True tysnd1
TU100301 other upstream 521118 80765114 ~ 80766155 (+) True G91064
TU98806 other upstream 1521914 79751773 ~ 79765359 (+) True acoxl
TU98716 other upstream 1737622 79549017 ~ 79549651 (+) True G89667
TU96076 other upstream 3716803 77570015 ~ 77570470 (+) True G87159
TU95475 other upstream 4162846 77123935 ~ 77124427 (+) True G86614
TU100812 other downstream 250741 81538331 ~ 81541400 (+) False G91541
TU101077 other downstream 589949 81877539 ~ 81879178 (+) True G91779
TU101096 other downstream 618542 81906132 ~ 81907395 (+) True LOC110530526
TU101849 other downstream 841054 82128644 ~ 82148774 (+) False LOC110530572
TU101852 other downstream 841054 82128644 ~ 82145474 (+) False LOC110530572

Expression Profile