RNA id: TU101612


Basic Information

Item Value
RNA id TU101612
length 2712
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G92257
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 81809349 ~ 81812912 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAAGACAACGACATGTCTTTTATTCAATTAGGAACAGAGAGATTACAGAATTACAACAAAACTGACAGCAGAACATACTTTCCAACATGTAGAAAATTTGGTTTATTTACGGTACATACAGTGGGTAAAACATTCCTTGAAAATAAATGCGGCAGTTTTTTTTAAGGCATTCAGACTTCAAGAAGTTAACACTGTACAAAATAATTGCACTGAAAAAAGTAGACCAAAGTGCGACAAATATTATTACAATTTGATGAGTTCATAACTAATCTGGAATCTTGTTTCTTCAGAGCCAAAACATTCGTTGAAATATTATGCAAAAATTGATTCCTAATTCCTCATCAAAATCTTCTGATACTTGAAAGAATATCCCTAGATGCAAATCATATGGTCTTTCCTTTCACTTCCAATTTAAATAAGTGCTATCAGTTACTCTAGCTCTCTCTCATACATAAGACACACATACGGTACATCTTGGGATATTCTCTCATACATACACACGTACTTTTGCATCTTGGGATATTCTTTCaagtataaatatattttttaagacaGTCATTAAATAACAACCCGGTACCAAAGCAAATCTCTCATTCCTAGAAAGTGGAATTCCTATAGTTTTTCACGATCACTCCTAGAGTGTTCATTTGGTTGGACATCAATTGTTGGCGCTTTCTTTCCCTCCCCTATGTTGCATCCATATTTTTCTAGACATGTCCATGTCTACAAGCAAAGTACATAACATTACTTCCATAAGGCATCTTGGGCGAGTCCTGACAAAATATTTTTCTTCAAGATATCGAGAGGCAAATGCTCTCATAACCTCTTTTTTTCACATTGTCCTATTGGAGAAGGGAGACAGAAGTCCCATATTCGTATTTCAACTGCAGtaagagtaaaaaataaatacaaacaagTATTTCTTTGTATAATAAAGACTGATCAGTATGTCATTTCACTACATTTCAGTGCAGAGGTGTCTCCGTGAAGCAGGATGGGAAAAAACACCAACTGAAGTCACAGGCACCTTCACCCACACCAGAGGTATAAATCGTATTATACACAAATGACCCCGAGACCTTATGtaggtcccaaatgacacccgtttccctatatagtgcaccacctATGACCAGAGCCCacattgggccctggtcaaaactagtgcactatatagggaatagggtgccatttgaaactTGGAGAACTTCCTTCATCCTCTTCTACAAGGAGGAAAGACTCCTGTTAAGAGCAACTTGGACAGGAGGAGACCACTGGTGCTTTCATGTGTAATGCCGCAGCAGAAGTGAACTTCTATGCCAGCCTATATGGAATAGGATCTGGTATATAATGACAGCTAAAACAGTACTTTGACTATGAAGTAGGTAGGGCTGTTTCAACAGCAGCTTACGGTAAAATCAGACTGAAGGTGGGTGCCTtgataaaacaaataaaatatcaATAAACTTACATTTTGAACTTGACAAAAGCTGGACTTCTCTCAGGACTTAAGACTACTCCACTCTTATGAAATGAACGTCAGCAAAGCGCGACTGATTGAGAGATCGGTCCTGACATATCAAAGAGATTATTTTTTGTCTGAATTGAACGAAACGTGATCAAAACAAAACTTGCCTGCTTCGCCTTCATGTCAAGAAACCCCAAACTCCTTATTTTTTTTCACTTAACAATTTCAAAAGTGCCACAGAGGGTTAATTAATAATAGCACATGAATAAATTAGAGGTTAATATTCTTCCATCTTCATTGTTGGTGCACAGATGGCACAGGCAGGTAGTTTGGTTGGTGTAATGTTTCACACATTACACCATCTAGCTCCGCCACACACACTTCAGGCTATTCCACAGATAACAAGACTCTCTAATCAAGACTCTTCCAGTGTCTGTGCCAATATGCCCAGCCTTGCCACTCTATAAGCTCGCTTTGGCTAATAGTCACCTCACACAGCATTCATTTAAAAAACACAACATAAAAAAATACACAATTTACTGAAAGGTCTAGGACCGTTTTAAAGCCAATATTAGTCTGAGGAACTCAGGAATAGGTTTTTAACTAATAATACAGAAATGAAACATCAATGAACCATGGTCTGATCACTACTATGTGCAGCACTACTAACTCCATCATCGCTGCAATTTACTACAGCTACTATCTTTCCATCTTTCGTTGGTTTGGCCCGTTTTAACATATCTGGTATCGGTCTTATCAAGTCCGTAACAGTTTGAGGCGGTTGAGACAACATTACTCAGCCAGTCTTGTGGCTGCCGTCACCGGTTCTCTGGGCGCGGGTCGAGATGAGGTCGCGGGACACCCTCTTGCAGTCCTTGGCCAGGCCCAGGAAGCACATGAGGTCTATGAAGGCGGTGGTGATGTTCAACTTCATGCCGAACTCACTGGTGGCGTAGTCGAAGGGAAAGGTGTGGTGGTAGTTGTGGAAGCCCTCACCTGAAAGGAGACCAGGGCCGATGGCGCTGAAGGCCACGAAACGGTTCTCACTGGGGTTGATGTTGCGGTCGTAGGGTCGGTTGCCCCACATGTGAGCGGCAGAGTTGACCAGCCAGGTAGCGTTCAGCACCAGAGCATACCTCATGAGGCACGGGATGAAGTAGCCCACCCACAGGGACTCATCCCACAGAAACCAGGGTACCAACATGGGCACCAGGAAACACAGCAGGACCACAGACAGCTTGTA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101632 lncRNA downstream 9713 81799399 ~ 81799636 (-) True G92277
TU101516 lncRNA downstream 24592 81778559 ~ 81784757 (-) True G92176
TU101624 lncRNA downstream 24996 81779423 ~ 81784353 (-) True G92269
TU101575 lncRNA downstream 130344 81677277 ~ 81679005 (-) False G92233
TU101639 lncRNA upstream 5422 81818334 ~ 81820763 (-) True G92284
TU101667 lncRNA upstream 48159 81861071 ~ 81863700 (-) True G92311
TU101688 lncRNA upstream 95973 81908885 ~ 81909216 (-) True G92331
TU101696 lncRNA upstream 109676 81922588 ~ 81922801 (-) True G92339
TU101703 lncRNA upstream 115563 81928475 ~ 81928698 (-) True G92346
XM_036986874.1 mRNA downstream 83583 81648412 ~ 81725766 (-) False LOC110530466
XM_036986871.1 mRNA downstream 83583 81648413 ~ 81725766 (-) True LOC110530466
XM_021613577.2 mRNA downstream 179623 81607478 ~ 81629726 (-) False LOC110530475
XM_036986856.1 mRNA downstream 251971 81545225 ~ 81557378 (-) True qrfpra
XM_036986845.1 mRNA downstream 266765 81540550 ~ 81542584 (-) True rps24
XM_036989917.1 mRNA upstream 50912 81863824 ~ 81905659 (-) True LOC110530522
XM_021613778.2 mRNA upstream 337215 82150127 ~ 82156558 (-) True LOC110530583
XM_021616911.2 mRNA upstream 369981 82182893 ~ 82187206 (-) True LOC110532767
XM_021613824.2 mRNA upstream 378006 82190918 ~ 82198422 (-) True LOC110530609
XM_036989927.1 mRNA upstream 397590 82210502 ~ 82218883 (-) True LOC118966721
TU101510 other downstream 192025 81607478 ~ 81617324 (-) True LOC110530475
TU101313 other downstream 627886 81180824 ~ 81181463 (-) False LOC110532756
TU101255 other downstream 773211 81035575 ~ 81036138 (-) True G91947
TU101251 other downstream 777991 81030832 ~ 81031358 (-) True G91943
TU101249 other downstream 780737 81027908 ~ 81028612 (-) True G91941
TU101970 other upstream 347495 82160407 ~ 82161743 (-) False G92566
TU101980 other upstream 347495 82160407 ~ 82161743 (-) True G92566
TU102078 other upstream 480901 82293813 ~ 82294303 (-) False LOC110532782
TU102047 other upstream 482400 82295312 ~ 82301847 (-) True LOC110532782
TU103453 other upstream 1136702 82949614 ~ 82961322 (-) False LOC100301648

Expression Profile