RNA id: TU101639


Basic Information

Item Value
RNA id TU101639
length 2142
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G92284
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 81818334 ~ 81820763 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcactgacttactggtgctctttcatgccgtccctaggaggggtgcttcacttgagtgggttgagttacTGATgggatcttcctgtctgggttggcgccccccccttgggttgtgccgtggcggagatctttgtgggctatactctgccttgtctcaggatggacctgagccataggaccatgcctcaggactacctggcatgatgactccttgctgtccacagtccacctggccgtgctgctgctccagtttcaactgttctgcctgtggctatggaatcctgacctgttcaccggacacgctacctgtcccaggcctattatttgaccatgctggtcatttatgaacatttgaacatcttggccatgttctgttataatctccacccggcacagccagaagaggactcgccacccctcatagcctggttcctctctctgtttcttcctaggttttggcctttctagggggtttttcctagccaacgtgcttcaacacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttgaaatatcagctgatgtacgaagggctatataaataaatttgatttgatgattaaaGCAGGGGTCTCCCAATATTTTCTAGCATGAGATCTGCTTCAAAAAGGCATGTTTTTCTCTTCTCACCTACGCTGCAACTCTTCCCCGAGTCCTTGGTGTACaagagatgtgttttctgtcaatatacctggtaaAACAATGGTTAATAAACAACATCTAAGGGGGCtcaataaaattatattttgtttgttccTGAATTCagttctttgttttctttttccTGGTTtacgatatacagttgaagtcgggaagtttacatgcacttaggttggagtcattaaaactcgtatttcaaccactccacaaatgtgttgttaacaaactatagttttggcaagttggttaggacatctactttgtgcatgacacaagtaatttttccaacaattgttcacagacagattatttcacttataattcactttatcaaaattccaatgggtcagaagtttacatccactaagttgactgtgcctttaaacagcttggaaaattccagaacattatgtcatggctttagaagcttctgataggctaattgacatcatttgagtcaattggaggtgaacctgtggatatctttcaaggcctaccttcaaactcagtgcctctttgcttgacatcatgggaaaatcaaaataaatcagccaagacctcagaaaattgtagacctccacaagtctggttcatctgtacaaacaatagtacgcaagtataaacacgatgggaccacgcagccgtcataccgctcaggaaggagacgcgttctgtctcctagagatgaacgtactttggtgcgaaaagtgcaaatcaatcccagaacaacagcaaaggaccttgtgaagatgctggaggaaacaggtacaaaagtttctatatccacagtaaaacgtgtcctatatcgacataacctgaaaggccgctcaagaaggaagaagccactgctctaaaaccgccctaaaaaagccagactacggtttacaaatgcacatggggacaaagatcatactttttggagaaatgtcctctggtctgatgaaacaaaaatagaactgtttggccataatgaccatcattatgtttggaggaaaaagggggaggcttgcaagccgaagaacaccatcccaaccgtgaagcacgggggtggcagcatcatgttgtgggggtgctttgctgaaggagggaatgatgcacttcacaaaatagatgacaccatgggaaggaaaattatgtggatatattgaagcaacatctcaagacatcaatcagtcaggaagttaaagcttggtcgcaaatgggtcttcaaaatggacaatgaccccaagcatacttccaaagttgtggcaaaatggcttaaggacaacaaagtcaaggtattgaagtggtcatcacaaagccctcacctcagtcctatagagaatttgtgggcagaactgaaatagTGTGTGaaagcaaggaagcctacaaacccgactcagttacaccagctctgtcaggaggaatgggacaaaattcacccgacttattgtgagaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101612 lncRNA downstream 5422 81809349 ~ 81812912 (-) True G92257
TU101632 lncRNA downstream 18698 81799399 ~ 81799636 (-) True G92277
TU101516 lncRNA downstream 33577 81778559 ~ 81784757 (-) True G92176
TU101624 lncRNA downstream 33981 81779423 ~ 81784353 (-) True G92269
TU101579 lncRNA downstream 139329 81677277 ~ 81679005 (-) False G92233
TU101667 lncRNA upstream 40308 81861071 ~ 81863700 (-) True G92311
TU101688 lncRNA upstream 88122 81908885 ~ 81909216 (-) True G92331
TU101696 lncRNA upstream 101825 81922588 ~ 81922801 (-) True G92339
TU101703 lncRNA upstream 107712 81928475 ~ 81928698 (-) True G92346
TU101709 lncRNA upstream 119626 81940389 ~ 81940826 (-) True G92352
XM_036986874.1 mRNA downstream 92568 81648412 ~ 81725766 (-) False LOC110530466
XM_036986871.1 mRNA downstream 92568 81648413 ~ 81725766 (-) True LOC110530466
XM_021613577.2 mRNA downstream 188608 81607478 ~ 81629726 (-) False LOC110530475
XM_036986856.1 mRNA downstream 260956 81545225 ~ 81557378 (-) True qrfpra
XM_036986845.1 mRNA downstream 275750 81540550 ~ 81542584 (-) True rps24
XM_036989917.1 mRNA upstream 43061 81863824 ~ 81905659 (-) True LOC110530522
XM_021613778.2 mRNA upstream 329364 82150127 ~ 82156558 (-) True LOC110530583
XM_021616911.2 mRNA upstream 362130 82182893 ~ 82187206 (-) True LOC110532767
XM_021613824.2 mRNA upstream 370155 82190918 ~ 82198422 (-) True LOC110530609
XM_036989927.1 mRNA upstream 389739 82210502 ~ 82218883 (-) True LOC118966721
TU101510 other downstream 201010 81607478 ~ 81617324 (-) True LOC110530475
TU101313 other downstream 636871 81180824 ~ 81181463 (-) False LOC110532756
TU101255 other downstream 782196 81035575 ~ 81036138 (-) True G91947
TU101251 other downstream 786976 81030832 ~ 81031358 (-) True G91943
TU101249 other downstream 789722 81027908 ~ 81028612 (-) True G91941
TU101970 other upstream 339644 82160407 ~ 82161743 (-) False G92566
TU101980 other upstream 339644 82160407 ~ 82161743 (-) True G92566
TU102078 other upstream 473050 82293813 ~ 82294303 (-) False LOC110532782
TU102047 other upstream 474549 82295312 ~ 82301847 (-) True LOC110532782
TU103453 other upstream 1128851 82949614 ~ 82961322 (-) False LOC100301648

Expression Profile