RNA id: TU101703



Basic Information


Item Value
RNA id TU101703
length 224
lncRNA type intronic
GC content 0.47
exon number 1
gene id G92346
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 81928475 ~ 81928698 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cacacacacacacacacacacacacacacagaagacggAGTTACAAATTAGAACCAACAACCCACCCTTATAACTGAATATGGCTGCCATAAGATGAATAAATGCGGGCAGGTTTGTGGTCATTCAAATGGAGCCTGACTTCCAGTAATATAAACTGGTTAACAGGTTGAACTCATATCTTGACACACACGTCTAGTAAAATAAGCCAATATAACAGGCTGGGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU101696 lncRNA downstream 5674 81922588 ~ 81922801 (-) True G92339
TU101688 lncRNA downstream 19259 81908885 ~ 81909216 (-) True G92331
TU101667 lncRNA downstream 64775 81861071 ~ 81863700 (-) True G92311
TU101639 lncRNA downstream 107712 81818334 ~ 81820763 (-) True G92284
TU101612 lncRNA downstream 115563 81809349 ~ 81812912 (-) True G92257
TU101709 lncRNA upstream 11691 81940389 ~ 81940826 (-) True G92352
TU101723 lncRNA upstream 23241 81951939 ~ 81952179 (-) True G92364
TU101727 lncRNA upstream 37554 81966252 ~ 81966488 (-) True G92368
TU101737 lncRNA upstream 56169 81984867 ~ 81985073 (-) True G92378
TU101743 lncRNA upstream 63733 81992431 ~ 81992643 (-) True G92384
XM_036989917.1 mRNA downstream 22816 81863824 ~ 81905659 (-) True LOC110530522
XM_036986874.1 mRNA downstream 202709 81648412 ~ 81725766 (-) False LOC110530466
XM_036986871.1 mRNA downstream 202709 81648413 ~ 81725766 (-) True LOC110530466
XM_021613577.2 mRNA downstream 298749 81607478 ~ 81629726 (-) False LOC110530475
XM_036986856.1 mRNA downstream 371097 81545225 ~ 81557378 (-) True qrfpra
XM_021613778.2 mRNA upstream 221429 82150127 ~ 82156558 (-) True LOC110530583
XM_021616911.2 mRNA upstream 254195 82182893 ~ 82187206 (-) True LOC110532767
XM_021613824.2 mRNA upstream 262220 82190918 ~ 82198422 (-) True LOC110530609
XM_036989927.1 mRNA upstream 281804 82210502 ~ 82218883 (-) True LOC118966721
XM_036989935.1 mRNA upstream 303882 82232580 ~ 82245632 (-) True LOC118966722
TU101510 other downstream 311151 81607478 ~ 81617324 (-) True LOC110530475
TU101313 other downstream 747012 81180824 ~ 81181463 (-) False LOC110532756
TU101255 other downstream 892337 81035575 ~ 81036138 (-) True G91947
TU101251 other downstream 897117 81030832 ~ 81031358 (-) True G91943
TU101249 other downstream 899863 81027908 ~ 81028612 (-) True G91941
TU101970 other upstream 231709 82160407 ~ 82161743 (-) False G92566
TU101980 other upstream 231709 82160407 ~ 82161743 (-) True G92566
TU102078 other upstream 365115 82293813 ~ 82294303 (-) False LOC110532782
TU102047 other upstream 366614 82295312 ~ 82301847 (-) True LOC110532782
TU103453 other upstream 1020916 82949614 ~ 82961322 (-) False LOC100301648

Expression Profile