RNA id: TU101752



Basic Information


Item Value
RNA id TU101752
length 421
lncRNA type antisense_over
GC content 0.58
exon number 1
gene id G92393
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 82001689 ~ 82002109 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGTTCCAGTTGGACTCCTTGAAGCGACCCCAGCCTTTGACCTTGGCTGGCTCGGACAATTGGAGAGATGGGGCCTGGAGCTGGGCTTTTTCTGAGGGGCCGGAGGTTGTGGACGCCAAGATGGAAATTGAAGGAATGGGCGTGGCTGGACTTTCGGTGACGGTGACAAtgctggtggtggtgatgatttcATGGATGGGAATGGGCTCAACATAAACGGTCTGGCCTCTCTCCAGGTCATCGGATGGGTCAGCCCGCTCCTGATGTACACGGGCCTCCTTCTGCTGCCGGAACCGCTGGAAGAGCCGACGGACCGGATGGTCCGGCGGGAGGTTGAGGGGCGCCTCATTCTTTCGTCTCAGGcgctcctcctcctctcgttTCACATCGCTGATCTTTCTGAACACAATCTGTAGAGAGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU101743 lncRNA downstream 9046 81992431 ~ 81992643 (-) True G92384
TU101737 lncRNA downstream 16616 81984867 ~ 81985073 (-) True G92378
TU101727 lncRNA downstream 35201 81966252 ~ 81966488 (-) True G92368
TU101723 lncRNA downstream 49510 81951939 ~ 81952179 (-) True G92364
TU101709 lncRNA downstream 60863 81940389 ~ 81940826 (-) True G92352
TU101754 lncRNA upstream 3009 82005118 ~ 82007894 (-) True G92394
TU101781 lncRNA upstream 25792 82027901 ~ 82028128 (-) True G92421
TU101810 lncRNA upstream 62506 82064615 ~ 82064868 (-) True G92449
TU101812 lncRNA upstream 63425 82065534 ~ 82065758 (-) True G92451
TU101835 lncRNA upstream 83050 82085159 ~ 82085457 (-) True G92474
XM_036989917.1 mRNA downstream 96030 81863824 ~ 81905659 (-) True LOC110530522
XM_036986874.1 mRNA downstream 275923 81648412 ~ 81725766 (-) False LOC110530466
XM_036986871.1 mRNA downstream 275923 81648413 ~ 81725766 (-) True LOC110530466
XM_021613577.2 mRNA downstream 371963 81607478 ~ 81629726 (-) False LOC110530475
XM_036986856.1 mRNA downstream 444311 81545225 ~ 81557378 (-) True qrfpra
XM_021613778.2 mRNA upstream 148018 82150127 ~ 82156558 (-) True LOC110530583
XM_021616911.2 mRNA upstream 180784 82182893 ~ 82187206 (-) True LOC110532767
XM_021613824.2 mRNA upstream 188809 82190918 ~ 82198422 (-) True LOC110530609
XM_036989927.1 mRNA upstream 208393 82210502 ~ 82218883 (-) True LOC118966721
XM_036989935.1 mRNA upstream 230471 82232580 ~ 82245632 (-) True LOC118966722
TU101510 other downstream 384365 81607478 ~ 81617324 (-) True LOC110530475
TU101313 other downstream 820226 81180824 ~ 81181463 (-) False LOC110532756
TU101255 other downstream 965551 81035575 ~ 81036138 (-) True G91947
TU101251 other downstream 970331 81030832 ~ 81031358 (-) True G91943
TU101249 other downstream 973077 81027908 ~ 81028612 (-) True G91941
TU101970 other upstream 158298 82160407 ~ 82161743 (-) False G92566
TU101980 other upstream 158298 82160407 ~ 82161743 (-) True G92566
TU102078 other upstream 291704 82293813 ~ 82294303 (-) False LOC110532782
TU102047 other upstream 293203 82295312 ~ 82301847 (-) True LOC110532782
TU103453 other upstream 947505 82949614 ~ 82961322 (-) False LOC100301648

Expression Profile