RNA id: TU101998


Basic Information

Item Value
RNA id TU101998
length 1639
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G92584
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 82188240 ~ 82189878 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaacatattttttattgtaaaatagTGTATCATCACTAAAATAAACACTACATTAACTCATGTCACTTGATAGATGTATGTTAGAAAAGGATACACAGTGATTCACATATTTTAACACATTTCATATTCAACATTTTTATAATTTCGAGGTATTGTAATATGTAACACCTAACTGTCCTCACCCCACCCCTATACAAACATAAGTGTTGAGAAAGTGCTTTTAGATCAGGTGAAAGTCACTCAGTagatacactgactgtacaaaacatgaggaacaccttcctagtattgTGTTGCACTCAATTCattagggcatggactctacaaggtattgaaagcattccacagggatgctggccaatgttgattccaatgcttcccacagttgagtCACTGTCAACTTGTCTGAATctcctttgtgtggtggaccattcttgatacgtcTGGGAAACTGTTAGGCGTGTaaaacccaacagcgttgcagttcttgacaaacttaaaccggtgctcctggtaccgactaccataccccgttgaaTGGCACTTAAATATtaagtcttgcccattcacccactgaatggcacacacacaatccatgtctcatttgtctcaaggcttaaaaatccttctttaacctatctgctcctcttcatctacactgtttTTGTAGTGaacttaacaagtgacatcaataagggatcatagctttcacctggattcacctggtcagtctatgtcatggaaagaagaggtgttcctaatgttttgtaaactcagtgtatataaactgaattaaaatataaaatcaacatgcaacaatttcaaagatgttactgagttacagttcatagaaggaaatcagtcaatttaaataaatcacttaggCCCTCATCTATAGATTTCATATGACTGAGAGCGCAGATATGCATCTGTCTGTCACAGACACCTTCAAAGAAAAGTAGGGGCCTGAATCAGAAAACCAGTGTCTGGTAtcaccaccatttgcctcatgcagcatgacacatctccttcacatagagttgatcaggctgttgattgtgacctgtggaatgttgtcccactcctcttcaatggctgtgaggagttgctggatattggcacaaactggaacacgctgtcgtacaagtcgatccagagcatcccaaacatgctcaatggtggttatgcaggccatagaagaactgggacatttttagcatccagaaattgtgtacagagcCTTGCGACTTGGGGccatgtattatcatgctgaaacaggaggtGATGAATGGCACAATAATGGGTCTCAGGATGTGGTCATTGTATCTCATTCAAATTTCCataaataaaatgcaattgtgtttgttgtcgtccgtagcttatgcctgcccataccataaccacaccaccaccatggggctctctgttcacaCCGTTGACATGAGCAAACCACTTGCCCTCGCGACACAGTACACGCTgtttgccatctgcccggtaaGGTTGAAACCTGGAtttatccgtgaagagcacacttctccagcatgccagcgGCCTTCTAAGGTGAGTGTTTAACCACTGAATTTGATTACGACTCCAAACTGCAGTCAAGTCAAGACCCCGGTGaagacgacgagcacgc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101996 lncRNA upstream 1669 82186356 ~ 82186571 (+) True G92582
TU101921 lncRNA upstream 24349 82163573 ~ 82163891 (+) True G92524
TU101863 lncRNA upstream 24742 82149032 ~ 82163498 (+) True LOC110530572
TU101904 lncRNA upstream 26568 82160032 ~ 82161672 (+) False G92523
TU101910 lncRNA upstream 26568 82160032 ~ 82161672 (+) True G92523
TU102028 lncRNA downstream 115483 82305361 ~ 82305574 (+) True G92609
TU102040 lncRNA downstream 132797 82322675 ~ 82322884 (+) True G92621
TU102095 lncRNA downstream 133613 82323491 ~ 82323707 (+) True G92671
TU102117 lncRNA downstream 149852 82339730 ~ 82339967 (+) True G92693
TU102162 lncRNA downstream 179170 82369048 ~ 82369365 (+) True G92736
XM_021613789.2 mRNA upstream 9163 82172076 ~ 82179077 (+) True LOC110530588
XM_036986901.1 mRNA upstream 39391 82128619 ~ 82148849 (+) False LOC110530572
XM_021613766.2 mRNA upstream 39393 82128619 ~ 82148847 (+) False LOC110530572
XM_036986899.1 mRNA upstream 184587 81910118 ~ 82003653 (+) False LOC110530536
XM_036986902.1 mRNA downstream 266421 82456299 ~ 82916411 (+) False LOC110530624
XM_021613904.2 mRNA downstream 1217773 83407651 ~ 83442131 (+) False LOC110530670
XM_021613913.2 mRNA downstream 1217773 83407651 ~ 83442131 (+) False LOC110530670
XM_021613972.2 mRNA downstream 1217773 83407651 ~ 83442131 (+) False LOC110530670
XM_036986972.1 mRNA downstream 1217773 83407651 ~ 83442131 (+) False LOC110530670
TU101989 other upstream 6444 82180946 ~ 82181796 (+) True G92575
TU101852 other upstream 42766 82128644 ~ 82145474 (+) False LOC110530572
TU102659 other downstream 898653 83088531 ~ 83089932 (+) True G93204
TU102821 other downstream 1143388 83333266 ~ 83333576 (+) True G93362
TU102814 other downstream 1282555 83472433 ~ 83473224 (+) True LOC110530741
TU102887 other downstream 1321268 83511146 ~ 83549590 (+) True LOC110530763
TU104152 other downstream 1855433 84045311 ~ 84048149 (+) True G94463

Expression Profile