RNA id: TU102051


Basic Information

Item Value
RNA id TU102051
length 2635
lncRNA type sense_over
GC content 0.44
exon number 3
gene id G92631
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 82200416 ~ 82223759 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctagttaaataaaggttaaataaaataaatacaattaaaatccTCCTTCCTTCATGTTGCAGAAAACCCTTGAGGACCCATGGAGCATCATGCTGGTTGCTAGTGAACAAGCACAACTGATGGCAAATCTGGCCAAACTGATCAATGCCAGCAAAACCATTGAAATTGGGATGTACACAGGGTACAACACCCTGAACATGGCGTTGGTTGTACCAGAGAGTGGTCAAGTGGTAGCATGTAAAATAGACGACGAATACGTGAACATTGCTAAACCTTTCTTTAAAGAGGTCAGATCAACATGCCGCTAATCATTCAGCTAGTTTACTTGCTCCAATATTCCTCTAGACAGGAATTAGATCTGTTTGTCCAGTATTCAACCCCAATGCAACATCTAAACCCATTCAACCCGTTGGAATTCAGAAACATTGATTGTCTCCCCAAAAGCTTCAATATAGCATATTCTGTATCTAACATCTGTCAGTCAGACTTCACAAAATGCTGTGGGTGGAGTAGTGAGGCTGTCTGCTCAGAAGAATGTGTCAACGAAAGGTGCAAAGCCTAGCACTACAATGAACTTAATGCCCCCCTCCAAACCCCAACAGTAGAAATACTACTGGACACAACACAGGTCAACAGTTGTGACAGAAAATGGTTGGTATCGTCTGCTTCAAACCATCTAAACTcggaatcaaatcaaaatgtaactTAAAGCACATTGAAAATCCTCAATGGACAGCCCAGTTCGACCTGTGCCTGCGCTCTGGAGGTGCctggctagagtgggcattcagcctggaaGAGTGGCGTCAAGGCTACGCACCAGATCTTCAGTGCTCCCCCAAAGCTCGgttcatcctgtgcctcctccacggaccaggcctccagtaggtctccccagcctcgTCAGTCCGGAGCCCGTAACGAGGGTTCCCAGTCCCAGTCTGATTATTGCACAAGTGAGTCCATAGGTTAATCAGCAAGCATGGTGGAAATGCATTAGTGTGCCATGCTCATTGGCAGAAGTTAATAGGTGAAGGACATTCCACCCGCTTGCTAATggtaaagaggaagagagacgtGAGGCTATCCTGATGAGGTGTCAATAAATACACTAACATacctgctatgctgactAGTGAGATAGGAAGCAAGCAATGTGAATTATAGAGTTTACAAGGTGAATGAAATGCCGATCCATTCAAACCAGCCTTACCGACTGAACTTTCCTAAATACATTTCGAGTACAGCAGTTGTCCCCAACCGGTCGATCTctaaggcattcctagtcgatcaccaaacaatTCTGTAAAAAACCAAACGATAAAGACTTcggttctttttttaaatgtatttttttgctgTTGGGGGTagatgcacttgattcagcatCCCTAGCACCGGGAAGGCAAaggtcgtcctcaccagggtcttgacctgactgcagtttggcgttgtaatcaCTTCAGTGGTTAAATGCTCACCTTAGAAGGCCGCTGGCATGCTGCGAAAGTGGATAAATCATGGATAAATCCAGGTTACATtcgtaccgggcagatggcaaacAGCGTGTACTGTGTCGCGAGGGCAAGTGGTTTGCTCATGTCATCGGTGAgaacagagagccccatggtggtggtgtggttatggtatgggcaggcataagctacggatgacaacaaacacaattgtattttatttatgggATTacgaatgcacagagataccttgacgacatcctgaGGCACAATATCGTGCcattcatcacctcatgtttcagcatgataatgcacggcccatgttgcaaggatctgtacacaacttCTGGAAACTaaaaatgtctcagttcttccatggcctgcatacccaccagacatgccaaccattgagcatgtttgggatgctctggatcgacttgtacgacagcgtgttccagtttgtgccaatatccagcaactccgcacagccattgaagaggagtgggacaacattccacaggtcacaatcaacagcttgatcaactctatgcaaatgaGATGTATCACAAATTTTCAGGgcgtttaagccttgagacagttgagagatggattgtgtgtgtgccattcagagggtgaatgggcaagacaaaatgtttaagtgcctttcaatggggtatggtagtaggtaccaggagcaccggttttagtatgtcaagaactgcaatgctgttgggtttttcacgctcaacagtttcccgtgcaTATcacgaatggtccaccactcaaaggagaTTCAGACAACTTGACAGAATCTTGACAGTGACAAAAGCATTGGAATCAacttgggccagcatccctgtggaatgcttttaataccttgtagagtccatgcactgATGAATTGAgtgcaacacaatattaggaaggtgttcctcatgttttgtacagtcagtgtatctACTGAGTGACTTTCACCTGATCTAAAAGCACTTTCTCAACACTTATGTTTGTATAGGGGGTGGGGTGAGGACAGTTAGGTGTTACATATTACAATACCTCGAAATTATAAAAATGTTGAATATGAAATGTGTTAAAATATGTGAATCACTGTGCATCCTTTTCTAACATACATCTATCAAGTGACATGAGTTAATGTAGTG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102057 lncRNA downstream 10851 82188300 ~ 82189565 (-) True G92637
TU102056 lncRNA downstream 20264 82179295 ~ 82180152 (-) True G92636
TU102048 lncRNA downstream 21202 82177868 ~ 82179214 (-) True G92629
TU102049 lncRNA downstream 21345 82172016 ~ 82179071 (-) False G92629
TU102041 lncRNA downstream 36303 82163894 ~ 82164113 (-) True G92622
TU102053 lncRNA upstream 23091 82246850 ~ 82291520 (-) True G92633
TU102052 lncRNA upstream 46896 82270655 ~ 82271334 (-) True G92632
TU102059 lncRNA upstream 68018 82291777 ~ 82292107 (-) False LOC110532782
TU102085 lncRNA upstream 78143 82301902 ~ 82302118 (-) True G92661
TU102093 lncRNA upstream 90564 82314323 ~ 82314551 (-) True G92669
XM_021613824.2 mRNA downstream 1994 82190918 ~ 82198422 (-) True LOC110530609
XM_021616911.2 mRNA downstream 13210 82182893 ~ 82187206 (-) True LOC110532767
XM_021613778.2 mRNA downstream 43858 82150127 ~ 82156558 (-) True LOC110530583
XM_036989917.1 mRNA downstream 294757 81863824 ~ 81905659 (-) True LOC110530522
XM_036986874.1 mRNA downstream 474650 81648412 ~ 81725766 (-) False LOC110530466
XM_036989935.1 mRNA upstream 8821 82232580 ~ 82245632 (-) True LOC118966722
XM_036989946.1 mRNA upstream 34287 82258046 ~ 82266018 (-) True LOC110532773
XM_036989948.1 mRNA upstream 51310 82275069 ~ 82288547 (-) True LOC110530601
LOC110532782 mRNA upstream 68033 82291792 ~ 82301867 (-) False LOC110532782
XM_021613833.2 mRNA upstream 215383 82439142 ~ 82442325 (-) True LOC110530617
TU101970 other downstream 38673 82160407 ~ 82161743 (-) False G92566
TU101980 other downstream 38673 82160407 ~ 82161743 (-) True G92566
TU101510 other downstream 583092 81607478 ~ 81617324 (-) True LOC110530475
TU101313 other downstream 1018953 81180824 ~ 81181463 (-) False LOC110532756
TU101255 other downstream 1164278 81035575 ~ 81036138 (-) True G91947
TU102078 other upstream 70054 82293813 ~ 82294303 (-) False LOC110532782
TU102047 other upstream 71553 82295312 ~ 82301847 (-) True LOC110532782
TU103453 other upstream 725855 82949614 ~ 82961322 (-) False LOC100301648
TU103475 other upstream 725855 82949614 ~ 82961322 (-) False LOC100301648
TU103482 other upstream 725855 82949614 ~ 82961322 (-) True LOC100301648

Expression Profile