RNA id: TU102050


Basic Information

Item Value
RNA id TU102050
length 272
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G92630
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 82202855 ~ 82203272 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctggtTGCTAGTGAACAAGCACAACTGATGGCAAATCTGGCCAAACTGATCAATGCCAGCAAAACCATTGAAATTGGGATGTACACAGGGTACAACACCCTGAACATGGCGTTGGTTGTACCAGAGAGTGGTCAAGTGGTAGCATGTGAAATAGACGACGAATACGTGAACATTGCTAAACCTTTCTTTAAAGAGGTCAGATCAACATGCCGCTAATCATTCAGCTAGTTTACTTGCTCCAATATTCCTCTAGACAGGAATTAGATCTGTTT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102057 lncRNA downstream 13290 82188300 ~ 82189565 (-) True G92637
TU102056 lncRNA downstream 22703 82179295 ~ 82180152 (-) True G92636
TU102048 lncRNA downstream 23641 82177868 ~ 82179214 (-) True G92629
TU102049 lncRNA downstream 23784 82172016 ~ 82179071 (-) False G92629
TU102041 lncRNA downstream 38742 82163894 ~ 82164113 (-) True G92622
TU102053 lncRNA upstream 43578 82246850 ~ 82291520 (-) True G92633
TU102052 lncRNA upstream 67383 82270655 ~ 82271334 (-) True G92632
TU102059 lncRNA upstream 88505 82291777 ~ 82292107 (-) False LOC110532782
TU102085 lncRNA upstream 98630 82301902 ~ 82302118 (-) True G92661
TU102093 lncRNA upstream 111051 82314323 ~ 82314551 (-) True G92669
XM_021613824.2 mRNA downstream 4433 82190918 ~ 82198422 (-) True LOC110530609
XM_021616911.2 mRNA downstream 15649 82182893 ~ 82187206 (-) True LOC110532767
XM_021613778.2 mRNA downstream 46297 82150127 ~ 82156558 (-) True LOC110530583
XM_036989917.1 mRNA downstream 297196 81863824 ~ 81905659 (-) True LOC110530522
XM_036986871.1 mRNA downstream 477089 81648413 ~ 81725766 (-) True LOC110530466
XM_036989927.1 mRNA upstream 7230 82210502 ~ 82218883 (-) True LOC118966721
XM_036989935.1 mRNA upstream 29308 82232580 ~ 82245632 (-) True LOC118966722
XM_036989946.1 mRNA upstream 54774 82258046 ~ 82266018 (-) True LOC110532773
XM_036989948.1 mRNA upstream 71797 82275069 ~ 82288547 (-) True LOC110530601
LOC110532782 mRNA upstream 88520 82291792 ~ 82301867 (-) False LOC110532782
TU101970 other downstream 41112 82160407 ~ 82161743 (-) False G92566
TU101980 other downstream 41112 82160407 ~ 82161743 (-) True G92566
TU101510 other downstream 585531 81607478 ~ 81617324 (-) True LOC110530475
TU101313 other downstream 1021392 81180824 ~ 81181463 (-) False LOC110532756
TU101255 other downstream 1166717 81035575 ~ 81036138 (-) True G91947
TU102078 other upstream 90541 82293813 ~ 82294303 (-) False LOC110532782
TU102047 other upstream 92040 82295312 ~ 82301847 (-) True LOC110532782
TU103453 other upstream 746342 82949614 ~ 82961322 (-) False LOC100301648
TU103475 other upstream 746342 82949614 ~ 82961322 (-) False LOC100301648
TU103482 other upstream 746342 82949614 ~ 82961322 (-) True LOC100301648

Expression Profile