RNA id: TU102165


Basic Information

Item Value
RNA id TU102165
length 237
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G92739
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 82371378 ~ 82371614 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgtaagggcgttcgtctgtaggaggaagagaagcggaccaaagcgcagcgtggtggttattcatgttttaataaatcgctacacatgaacaaactaacaaaaacaagaaatgtgaaaacgcaaaacagtcctatcctgtgacaccaaacacagtgacaggaacaatcacccacaaacacacagtgaaacccaggctacctaagtatgattctcaatcagagacaactaatgacacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102162 lncRNA upstream 2013 82369048 ~ 82369365 (+) True G92736
TU102117 lncRNA upstream 31411 82339730 ~ 82339967 (+) True G92693
TU102095 lncRNA upstream 47671 82323491 ~ 82323707 (+) True G92671
TU102040 lncRNA upstream 48494 82322675 ~ 82322884 (+) True G92621
TU102028 lncRNA upstream 65804 82305361 ~ 82305574 (+) True G92609
TU102232 lncRNA downstream 62425 82434039 ~ 82434293 (+) True G92795
TU102233 lncRNA downstream 62709 82434323 ~ 82434583 (+) True G92796
TU102222 lncRNA downstream 85157 82456771 ~ 82458136 (+) True LOC110530624
TU102402 lncRNA downstream 339524 82711138 ~ 82711436 (+) True G92961
TU102412 lncRNA downstream 350038 82721652 ~ 82722203 (+) True G92971
XM_021613789.2 mRNA upstream 192301 82172076 ~ 82179077 (+) True LOC110530588
XM_036986901.1 mRNA upstream 222529 82128619 ~ 82148849 (+) False LOC110530572
XM_021613766.2 mRNA upstream 222531 82128619 ~ 82148847 (+) False LOC110530572
XM_036986899.1 mRNA upstream 367725 81910118 ~ 82003653 (+) False LOC110530536
XM_036986902.1 mRNA downstream 84685 82456299 ~ 82916411 (+) False LOC110530624
XM_021613904.2 mRNA downstream 1036037 83407651 ~ 83442131 (+) False LOC110530670
XM_021613913.2 mRNA downstream 1036037 83407651 ~ 83442131 (+) False LOC110530670
XM_021613972.2 mRNA downstream 1036037 83407651 ~ 83442131 (+) False LOC110530670
XM_036986972.1 mRNA downstream 1036037 83407651 ~ 83442131 (+) False LOC110530670
TU101989 other upstream 189582 82180946 ~ 82181796 (+) True G92575
TU101852 other upstream 225904 82128644 ~ 82145474 (+) False LOC110530572
TU102659 other downstream 716917 83088531 ~ 83089932 (+) True G93204
TU102821 other downstream 961652 83333266 ~ 83333576 (+) True G93362
TU102814 other downstream 1100819 83472433 ~ 83473224 (+) True LOC110530741
TU102887 other downstream 1139532 83511146 ~ 83549590 (+) True LOC110530763
TU104152 other downstream 1673697 84045311 ~ 84048149 (+) True G94463

Expression Profile