RNA id: TU103342


Basic Information

Item Value
RNA id TU103342
length 1425
lncRNA type intronic
GC content 0.38
exon number 2
gene id G93836
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 82865695 ~ 82868569 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaagagtggGACAAATGACATCAACGAGTTCTGGATGTAATGACTTACTGGTAGGTTAGCGAATTAGAATGTAAACATCACAAATGATCCTGTCGACATAATACTTTATATTTCTCTTCTGGGGTCAGTAGTTAGAGTGTTATAGCGATTGAAgttagtatttttttttacagtgctaTATCTTAcaaccagtgatgtagtggtaaaataaTTGTAGGGTATACACTGATCACTGTCAGTGTTGAGTAAATTAAGTCACCCACCAATGGGTTTTTCCATGATAGATAGGTAAcagaggaggttggtggcaccttaattggggagtacaggttcgtggtaatgactggagtggaattggtggaatggtatcaaatacatgaaaCATATGGTTTTCAGGTGTTTGATGCCCTTCCATTTATCCACTACCACACCACAGCTTTAAGGTAGTATTCTACTGCACCACATCTAACAACTATTCaaggtagtattctactgtaccacaccaCAGCTTTaaggtagtattctactgtaccacaccaCAGCTTTaaggtagtattctactgtaccacaccaCATCTAACAACTATTCaaggtagtattctactgtaccacaccaCAGCTTTAAGGTAatattctactgtaccacaccacagcttcaaggtagtattctactgtaccacaccaCAGCTTTAAGGTAatattctactgtaccacaccaCAGCTTTaaggtagtattctactgtaccacaccaCATCTAACAACTATTCaaggtagtattctactgtaccacaccaCAGCTTTaaggtagtattctactgtaccacaccaCAGCTTTaaggtagtattctactgtaccacatCTAACAACTATTCaaggtagtattctactgtaccacaccaCAGCTTTaaggtagtattctactgtaccacatCTAACAACTATTCaaggtagtattctactgtaccacatCTAACAACTATTCaaggtagtattctactgtaccacatCTAACAACTATTCaaggtagtattctactgtaccacaccaCAGCTTTaaggtagtattctactgtaccacaccaCATCTAACAACTATTCaaggtagtattctactgtaccaccTCTAACAACTATTCaaggtagtattctactgtaccacatCTAACAACTATTCaaggtagtattctactgtaccacatCTAACAACTATTCaaggtagtattctactgtaccacatCACAGCTTTAAGGTAATATTCTACTGTACCACATCTAACAACTATTCaaggtagtattctactgtaccacaccaCAGCTTTAAGGTAATATTATACTGTACCACACCACAGCTTTAAgatagtattctactgtaccacaccaCATCTGACAACTATTCaaggtagtattctactgtaccacaccaC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103328 lncRNA downstream 35567 82829279 ~ 82830128 (-) True G93823
TU103265 lncRNA downstream 154316 82711054 ~ 82711379 (-) True G93761
TU103213 lncRNA downstream 171247 82631640 ~ 82694448 (-) True G93710
TU103227 lncRNA downstream 216941 82648068 ~ 82648754 (-) True G93723
TU103135 lncRNA downstream 329774 82535387 ~ 82535921 (-) True G93634
TU103508 lncRNA upstream 130934 82999503 ~ 83001499 (-) False G93904
TU103510 lncRNA upstream 130934 82999503 ~ 83001499 (-) True G93904
TU103533 lncRNA upstream 186137 83054706 ~ 83058742 (-) True G93926
TU103550 lncRNA upstream 210268 83078837 ~ 83079268 (-) True G93943
TU103618 lncRNA upstream 291001 83159570 ~ 83162155 (-) True G94001
XM_021613833.2 mRNA downstream 423370 82439142 ~ 82442325 (-) True LOC110530617
LOC110532782 mRNA downstream 563828 82291792 ~ 82301867 (-) False LOC110532782
XM_036989948.1 mRNA downstream 577148 82275069 ~ 82288547 (-) True LOC110530601
XM_036989946.1 mRNA downstream 599677 82258046 ~ 82266018 (-) True LOC110532773
XM_036989935.1 mRNA downstream 620063 82232580 ~ 82245632 (-) True LOC118966722
XM_036986937.1 mRNA upstream 81040 82949609 ~ 83267157 (-) False LOC100301648
XM_036986941.1 mRNA upstream 81040 82949609 ~ 83267157 (-) False LOC100301648
XM_036986935.1 mRNA upstream 81040 82949609 ~ 83267158 (-) False LOC100301648
XM_036986933.1 mRNA upstream 81040 82949609 ~ 83267159 (-) False LOC100301648
XM_036986949.1 mRNA upstream 81040 82949609 ~ 83267159 (-) False LOC100301648
TU102047 other downstream 563848 82295312 ~ 82301847 (-) True LOC110532782
TU102078 other downstream 571392 82293813 ~ 82294303 (-) False LOC110532782
TU101970 other downstream 703952 82160407 ~ 82161743 (-) False G92566
TU101980 other downstream 703952 82160407 ~ 82161743 (-) True G92566
TU101510 other downstream 1248371 81607478 ~ 81617324 (-) True LOC110530475
TU103453 other upstream 81045 82949614 ~ 82961322 (-) False LOC100301648
TU103475 other upstream 81045 82949614 ~ 82961322 (-) False LOC100301648
TU103482 other upstream 81045 82949614 ~ 82961322 (-) True LOC100301648
TU103830 other upstream 615487 83484056 ~ 83485937 (-) True G94201
TU104323 other upstream 932763 83801332 ~ 83802471 (-) True G94613

Expression Profile