RNA id: TU102787



Basic Information


Item Value
RNA id TU102787
length 334
lncRNA type antisense_over
GC content 0.52
exon number 1
gene id G93332
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 83305237 ~ 83305570 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGGTGTTGGTTGTTGTGCTGGTGTTGGCAGATctgggaggagacagagggacagttgtTGGTGTGGACTCTGTGGCTGCGGACTGTGTATACTGGGTTCCTCATCACAGCAGTCACTGCTGGACACGGGGCAAGGCCACGATGGGCCGAAtctgacaacacaacacacactggtTTGAGAACATTACCACACTGGTTAGATGGGAGGAACACACTGGTTAGATGGGAGGaacggttaagagcattgggccagtaattcGCTGGTTCCAATTCCCAAGCGGACAATGTGGAAAAATCTTCCAttctgctcttgagcaaggcagttgacccccaag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU102782 lncRNA upstream 6155 83298757 ~ 83299082 (+) True G93327
TU102781 lncRNA upstream 7670 83297294 ~ 83297567 (+) True G93326
TU102780 lncRNA upstream 8004 83297001 ~ 83297233 (+) True G93325
TU102778 lncRNA upstream 9607 83294266 ~ 83295630 (+) True G93323
TU102776 lncRNA upstream 14562 83289672 ~ 83290675 (+) True G93321
TU102788 lncRNA downstream 797 83306367 ~ 83307156 (+) True G93333
TU102789 lncRNA downstream 5212 83310782 ~ 83311424 (+) True G93334
TU102790 lncRNA downstream 5856 83311426 ~ 83311732 (+) True G93335
TU102792 lncRNA downstream 8472 83314042 ~ 83314421 (+) True G93337
TU102793 lncRNA downstream 12012 83317582 ~ 83317801 (+) True G93338
XM_036986902.1 mRNA upstream 388826 82456299 ~ 82916411 (+) False LOC110530624
XM_021613789.2 mRNA upstream 1126160 82172076 ~ 82179077 (+) True LOC110530588
XM_036986901.1 mRNA upstream 1156388 82128619 ~ 82148849 (+) False LOC110530572
XM_021613766.2 mRNA upstream 1156390 82128619 ~ 82148847 (+) False LOC110530572
XM_036986900.1 mRNA upstream 1301584 81910118 ~ 82003653 (+) False LOC110530536
XM_021613904.2 mRNA downstream 102081 83407651 ~ 83442131 (+) False LOC110530670
XM_021613913.2 mRNA downstream 102081 83407651 ~ 83442131 (+) False LOC110530670
XM_021613972.2 mRNA downstream 102081 83407651 ~ 83442131 (+) False LOC110530670
XM_036986972.1 mRNA downstream 102081 83407651 ~ 83442131 (+) False LOC110530670
XM_036986996.1 mRNA downstream 114942 83420512 ~ 83442131 (+) True LOC110530670
TU102659 other upstream 215305 83088531 ~ 83089932 (+) True G93204
TU101989 other upstream 1123441 82180946 ~ 82181796 (+) True G92575
TU101853 other upstream 1159785 82128644 ~ 82145452 (+) False LOC110530572
TU102821 other downstream 27696 83333266 ~ 83333576 (+) True G93362
TU102814 other downstream 166863 83472433 ~ 83473224 (+) True LOC110530741
TU102887 other downstream 205576 83511146 ~ 83549590 (+) True LOC110530763
TU104152 other downstream 739741 84045311 ~ 84048149 (+) True G94463
TU104770 other downstream 1077187 84382757 ~ 84410052 (+) False LOC110532822

Expression Profile