RNA id: TU103830


Basic Information

Item Value
RNA id TU103830
length 1491
RNA type TUCP
GC content 0.38
exon number 2
gene id G94201
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 83484056 ~ 83485937 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacacatatggaatcatgtagtaaccaaaaaaaaagtgttaatagggatagggggcagtattcggaagttcggatgactgacgtgcccaaagtaaactgcctgatactcaggcccagaagctaggatatgcatataattggatagaaaactctgaagtttctaaaactgttaaaataaggTCAGTGAGTGTAACAGACAcctcgttatttatctccggtattgaacacactATTCTCAGTCTTAATTTGTATCGTTTATTTATATATTAGGGTACCTAcggattgattagaaacgttgtttgactttagactaagtttattggtaacctttgggattcctttgtatgcattttgaacgagtgGAACAGGTGGATTACTCAATCAAACaagccaactaaactgacttttttgggatataaaaaggactttatcgaacaaaacgaccatttgttgtgtagctgggacacttgggattgcaaacagaggaagatcttcaaaaggtaagtgatttattttaaacgctatttctgacttttgcctctgctggtttggaaaatgtttttaatgcttttgtattTGGGGcgatgtcctcagataatcgcatggtatgcttttgccgtaaaacctttttgaaatctgaacaagcggctggattaacaagtagttaagcttttaaatgatgtatgacacttgtattttcatgaatgtttaatattactatttttgtattttgaatttcgcgctctgcaatttcaccggatgttgtcgagggggGCACTAGCGGCACGTCAAGCccaaagttaaacaaatcaaaatatattttacgtagccacactttgccttgatgacagctttgcacacttttggcattctctcaaccagcttcatgaggtagtcacctggaatgcatttcaattaacaggtgtgccttgttaaaagttcatttgtggaatttctttccttcttaatgcgtttgagacaatcagttgtgttctgacaaggtagggttggtatacagaagatagtatgGACTTTGACCATATTTCAGCTGTTATTGCCATAGTCATATGAAAAGATAAacgacatggtcagtcaatcctgaaaatgtcaagaacttttaaagtttcttcaagtgcagtcgcaaaaaccatcaagcgctatgatgaaactgtctctcatgaggatcaCCACAGGAATgtaagacccagagttccctctgctgcagaggacaagttcattattagcgttaccagtctcagaaattacagcccaaataaatgcttcagagttgaagtagcagacacatctcaacatcaactgttcagaggaggaaaagcagtcaacaaatgctcagcatatgtgggaactccttcaaggctgttggaaaagcaatccaggtgtagctggttgagagaatgcaaagctacCATCAAGGGAAAGgggggctatttgaagaatctaaaatattgtttgatttgtttaacacttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103809 lncRNA downstream 3931 83453980 ~ 83480125 (-) True G94180
TU103722 lncRNA downstream 92245 83386983 ~ 83391811 (-) True LOC110530724
TU103753 lncRNA downstream 101875 83381935 ~ 83382181 (-) True G94130
TU103734 lncRNA downstream 135569 83348259 ~ 83348487 (-) True G94111
TU103730 lncRNA downstream 143545 83340292 ~ 83340511 (-) True G94107
TU103835 lncRNA upstream 9059 83494996 ~ 83495230 (-) True G94206
TU103837 lncRNA upstream 10141 83496078 ~ 83496284 (-) True G94208
TU103820 lncRNA upstream 13334 83499271 ~ 83499488 (-) True G94191
TU103840 lncRNA upstream 14407 83500344 ~ 83500657 (-) True G94211
TU103842 lncRNA upstream 16337 83502274 ~ 83502989 (-) True G94213
XM_036987024.1 mRNA downstream 74756 83388438 ~ 83409300 (-) False LOC110530724
XM_021613980.2 mRNA downstream 74757 83386997 ~ 83409299 (-) False LOC110530724
XM_021613988.2 mRNA downstream 74971 83386997 ~ 83409085 (-) False LOC110530724
XM_036986952.1 mRNA downstream 109433 83272529 ~ 83374623 (-) False LOC110530648
XM_036986957.1 mRNA downstream 109433 83272529 ~ 83374623 (-) False LOC110530648
XM_036987115.1 mRNA upstream 190127 83676064 ~ 83701456 (-) True LOC110532793
XM_036987195.1 mRNA upstream 227415 83713352 ~ 83718497 (-) False LOC110530770
XM_021614089.2 mRNA upstream 227415 83713352 ~ 83720755 (-) False LOC110530770
XM_036987207.1 mRNA upstream 227415 83713352 ~ 83720755 (-) False LOC110530770
XM_036987214.1 mRNA upstream 227415 83713352 ~ 83720755 (-) False LOC110530770
TU103453 other downstream 522734 82949614 ~ 82961322 (-) False LOC100301648
TU103475 other downstream 522734 82949614 ~ 82961322 (-) False LOC100301648
TU103482 other downstream 522734 82949614 ~ 82961322 (-) True LOC100301648
TU102047 other downstream 1182209 82295312 ~ 82301847 (-) True LOC110532782
TU102078 other downstream 1189753 82293813 ~ 82294303 (-) False LOC110532782
TU104323 other upstream 315395 83801332 ~ 83802471 (-) True G94613
TU104308 other upstream 672886 84158823 ~ 84160764 (-) False LOC110531033
TU104309 other upstream 672886 84158823 ~ 84160764 (-) True LOC110531033
TU104557 other upstream 717550 84203487 ~ 84204464 (-) True G94821
TU104675 other upstream 805823 84291760 ~ 84292623 (-) False LOC110532813

Expression Profile