RNA id: TU103957



Basic Information


Item Value
RNA id TU103957
length 347
lncRNA type intronic
GC content 0.39
exon number 1
gene id G94314
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 83666572 ~ 83666918 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtgcctttaaacagcttggaaaattccagaaaatatgtcatggctttagaagcttctgataattgacataatttgagtcaattgaaggtgtacctgaggatctatttcaaggcctaccttcaaactcagtgcctctttgcttgacatcatgggaaaaatcaacaaaaaaaataattcggttttttttcaaattttcaaattgtagaccaccacaagtctggttcatccttgggagcaattactaaatacctgaaggtaccacgttcatctgtacaaacaatagtatgcaagtataaacaccatgggaccacgcagctgtcataccgctcaggaaggagacgcgttct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU103956 lncRNA downstream 690 83665655 ~ 83665882 (-) True G94313
TU103955 lncRNA downstream 978 83665080 ~ 83665594 (-) True G94312
TU103954 lncRNA downstream 2348 83663356 ~ 83664224 (-) True G94311
TU103953 lncRNA downstream 3401 83662849 ~ 83663171 (-) True G94310
TU103800 lncRNA downstream 99067 83566032 ~ 83567505 (-) True G94172
TU103900 lncRNA upstream 2604 83669522 ~ 83675928 (-) False G94259
TU103901 lncRNA upstream 2604 83669522 ~ 83675928 (-) True G94259
TU103959 lncRNA upstream 19987 83686905 ~ 83687211 (-) True G94316
TU103894 lncRNA upstream 53010 83719928 ~ 83721471 (-) True LOC110530770
TU103989 lncRNA upstream 56990 83723908 ~ 83725485 (-) True G94333
XM_036987024.1 mRNA downstream 257272 83388438 ~ 83409300 (-) False LOC110530724
XM_021613980.2 mRNA downstream 257273 83386997 ~ 83409299 (-) False LOC110530724
XM_021613988.2 mRNA downstream 257487 83386997 ~ 83409085 (-) False LOC110530724
XM_036986964.1 mRNA downstream 291949 83272529 ~ 83374623 (-) False LOC110530648
XM_036987115.1 mRNA upstream 9146 83676064 ~ 83701456 (-) True LOC110532793
XM_036987195.1 mRNA upstream 46434 83713352 ~ 83718497 (-) False LOC110530770
XM_021614089.2 mRNA upstream 46434 83713352 ~ 83720755 (-) False LOC110530770
XM_036987207.1 mRNA upstream 46434 83713352 ~ 83720755 (-) False LOC110530770
XM_036987214.1 mRNA upstream 46434 83713352 ~ 83720755 (-) False LOC110530770
TU103830 other downstream 180635 83484056 ~ 83485937 (-) True G94201
TU103453 other downstream 705250 82949614 ~ 82961322 (-) False LOC100301648
TU103475 other downstream 705250 82949614 ~ 82961322 (-) False LOC100301648
TU103482 other downstream 705250 82949614 ~ 82961322 (-) True LOC100301648
TU102047 other downstream 1364725 82295312 ~ 82301847 (-) True LOC110532782
TU104323 other upstream 134414 83801332 ~ 83802471 (-) True G94613
TU104308 other upstream 491905 84158823 ~ 84160764 (-) False LOC110531033
TU104309 other upstream 491905 84158823 ~ 84160764 (-) True LOC110531033
TU104557 other upstream 536569 84203487 ~ 84204464 (-) True G94821
TU104675 other upstream 624842 84291760 ~ 84292623 (-) False LOC110532813

Expression Profile